Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25101 Sequoiadendron giganteum HOM05D002248 ORTHO05D041756 1.2e-68 263.1 133 100.0
Lj4g0007478 Lotus japonicus HOM05D002248 ORTHO05D006007 1.0e-11 73.9 78 64.1
Medtr4g108800 Medicago truncatula HOM05D002248 ORTHO05D006007 3.9e-11 72.0 78 61.5
Gohir.A07G064400 Gossypium hirsutum HOM05D002248 ORTHO05D006007 5.0e-11 71.6 80 57.5
Gohir.D07G069200 Gossypium hirsutum HOM05D002248 ORTHO05D006007 5.0e-11 71.6 80 57.5
Gorai.001G072700 Gossypium raimondii HOM05D002248 ORTHO05D006007 5.0e-11 71.6 80 57.5
Thecc.03G093200 Theobroma cacao HOM05D002248 ORTHO05D006007 8.6e-11 70.9 82 56.1
Psat4g049960 Pisum sativum HOM05D002248 ORTHO05D006007 1.9e-10 69.7 53 75.5
Ca_21811_v3 Cicer arietinum L. HOM05D002248 ORTHO05D006007 2.5e-10 69.3 78 57.7
VMungo1215G1016 Vigna mungo HOM05D002248 ORTHO05D006007 2.5e-10 69.3 43 86.0
Lalb_Chr12g0196941 Lupinus albus HOM05D002248 ORTHO05D006007 3.3e-10 68.9 43 86.0
Lalb_Chr13g0303101 Lupinus albus HOM05D002248 ORTHO05D006007 4.3e-10 68.6 79 57.0
Phvul.003G188800 Phaseolus vulgaris HOM05D002248 ORTHO05D006007 4.3e-10 68.6 79 58.2
Duzib068G1160 Durio zibethinus HOM05D002248 ORTHO05D006007 7.3e-10 67.8 82 53.7
Gorai.008G194500 Gossypium raimondii HOM05D002248 ORTHO05D006007 7.3e-10 67.8 81 56.8
arahy.Tifrunner.gnm1.ann1.0GG7BD Arachis hypogaea HOM05D002248 ORTHO05D006007 9.5e-10 67.4 43 83.7
arahy.Tifrunner.gnm1.ann1.Q5YJQ9 Arachis hypogaea HOM05D002248 ORTHO05D006007 9.5e-10 67.4 43 83.7
Glyma.05G025300 Glycine max HOM05D002248 ORTHO05D006007 1.2e-09 67.0 43 83.7
Glyma.17G101700 Glycine max HOM05D002248 ORTHO05D006007 1.2e-09 67.0 43 83.7
THA.LOC104819409 Tarenaya hassleriana HOM05D002248 ORTHO05D006007 1.2e-09 67.0 57 70.2
CAN.G479.69 Capsicum annuum HOM05D002248 ORTHO05D006007 1.6e-09 66.6 90 50.0
Gohir.A12G178700 Gossypium hirsutum HOM05D002248 ORTHO05D006007 1.6e-09 66.6 82 56.1
PSO832G2074 Papaver somniferum HOM05D002248 ORTHO05D006007 1.6e-09 66.6 80 51.2
TWI15G0439 Tripterygium wilfordii HOM05D002248 ORTHO05D006007 1.6e-09 66.6 80 53.8
Ah.02g113680 Amaranthus hybridus HOM05D002248 ORTHO05D006007 2.1e-09 66.2 43 79.1
Eucgr.K02489 Eucalyptus grandis HOM05D002248 ORTHO05D006007 2.8e-09 65.9 76 53.9
Gohir.D12G181300 Gossypium hirsutum HOM05D002248 ORTHO05D006007 2.8e-09 65.9 82 53.7
Manes.06G090100 Manihot esculenta HOM05D002248 ORTHO05D006007 2.8e-09 65.9 45 80.0
Peaxi162Scf00274g00342 Petunia axillaris HOM05D002248 ORTHO05D006007 2.8e-09 65.9 43 79.1
Sabra15G0087200 Salix brachista HOM05D002248 ORTHO05D006007 2.8e-09 65.9 38 89.5
TWI60G1545 Tripterygium wilfordii HOM05D002248 ORTHO05D006007 2.8e-09 65.9 80 52.5
TAR374G0843 Trochodendron aralioides HOM05D002248 ORTHO05D006007 2.8e-09 65.9 82 51.2
Atru.chr9.179 Acer truncatum HOM05D002248 ORTHO05D006007 3.6e-09 65.5 43 79.1
Ah.11g048240 Amaranthus hybridus HOM05D000662 ORTHO05D006007 3.6e-09 65.5 71 56.3
Migut.I00206 Erythranthe guttata HOM05D002248 ORTHO05D006007 3.6e-09 65.5 80 52.5
Nitab4.5_0001211g0310 Nicotiana tabacum HOM05D002248 ORTHO05D006007 3.6e-09 65.5 53 67.9
Nitab4.5_0005900g0120 Nicotiana tabacum HOM05D002248 ORTHO05D006007 3.6e-09 65.5 53 67.9
Actinidia35008 Actinidia chinensis HOM05D002248 ORTHO05D006007 4.7e-09 65.1 38 89.5
Aa31LG11G2010 Aethionema arabicum HOM05D002248 ORTHO05D006007 4.7e-09 65.1 77 55.8
DCAR_016573 Daucus carota HOM05D002248 ORTHO05D006007 4.7e-09 65.1 48 77.1
Dinv38738 Davidia involucrata HOM05D002248 ORTHO05D006007 4.7e-09 65.1 55 65.5
Eucgr.B00532 Eucalyptus grandis HOM05D002248 ORTHO05D006007 4.7e-09 65.1 80 56.2
Lj9A466T75 Lonicera japonica HOM05D002248 ORTHO05D006007 4.7e-09 65.1 40 85.0
Potri.015G062100 Populus trichocarpa HOM05D002248 ORTHO05D006007 4.7e-09 65.1 38 84.2
Aqoxy3G03465 Aquilegia oxysepala HOM05D002248 ORTHO05D006007 6.1e-09 64.7 81 51.9
Lsat_1_v5_gn_5_21561 Lactuca sativa HOM05D002248 ORTHO05D006007 6.1e-09 64.7 43 79.1
PSO063G4970 Papaver somniferum HOM05D002248 ORTHO05D006007 6.1e-09 64.7 80 50.0
QL10p017560 Quercus lobata HOM05D002248 ORTHO05D006007 6.1e-09 64.7 83 54.2
GSVIVG01007976001 Vitis vinifera HOM05D002248 ORTHO05D006007 6.1e-09 64.7 40 85.0
Ciclev10021564m.g Citrus clementina HOM05D002248 ORTHO05D006007 8.0e-09 64.3 43 81.4
MD06G1196800 Malus domestica HOM05D002248 ORTHO05D006007 8.0e-09 64.3 43 79.1
RcHm_v2.0_Chr7g0181861 Rosa chinensis HOM05D002248 ORTHO05D006007 8.0e-09 64.3 79 51.9
MBI02_g20486_MAGBIO Magnolia biondii HOM05D002248 ORTHO05D006007 1.0e-08 63.9 38 86.8
Pp3c7_23810 Physcomitrium patens HOM05D002248 ORTHO05D006007 1.0e-08 63.9 56 64.3
PGR083G1762 Punica granatum HOM05D002248 ORTHO05D006007 1.0e-08 63.9 38 81.6
Sc04g0002840 Simmondsia chinensis HOM05D002248 ORTHO05D006007 1.0e-08 63.9 54 66.7
CSS0002529 Camellia sinensis var. sinensis HOM05D002248 ORTHO05D006007 1.4e-08 63.5 38 86.8
Cfa018918 Carpinus fangiana HOM05D002248 ORTHO05D006007 1.4e-08 63.5 43 76.7
Haze_07300 Corylus avellana HOM05D002248 ORTHO05D006007 1.4e-08 63.5 43 76.7
MD14G1203700 Malus domestica HOM05D002248 ORTHO05D006007 1.4e-08 63.5 79 51.9
Manes.14G081000 Manihot esculenta HOM05D002248 ORTHO05D006007 1.4e-08 63.5 45 77.8
Prupe.5G197000 Prunus persica HOM05D002248 ORTHO05D006007 1.4e-08 63.5 43 76.7
Sopen03g034800 Solanum pennellii HOM05D002248 ORTHO05D006007 1.4e-08 63.5 53 67.9
PGSC0003DMG400019521 Solanum tuberosum HOM05D002248 ORTHO05D006007 1.4e-08 63.5 53 67.9
unitig_750.g28507 Utricularia gibba HOM05D002248 ORTHO05D006007 1.4e-08 63.5 56 66.1
ClCG04G012110 Citrullus lanatus HOM05D002248 ORTHO05D006007 1.8e-08 63.2 43 76.7
FAN13G2216 Fragaria x ananassa HOM05D002248 ORTHO05D006007 1.8e-08 63.2 75 50.7
Rhsim08G0152500 Rhododendron simsii HOM05D002248 ORTHO05D006007 1.8e-08 63.2 38 86.8
Sp2g24610 Schrenkiella parvula HOM05D002248 ORTHO05D006007 1.8e-08 63.2 81 54.3
Aa31LG3G18750 Aethionema arabicum HOM05D002248 ORTHO05D006007 2.3e-08 62.8 42 78.6
CARHR275170 Cardamine hirsuta HOM05D002248 ORTHO05D006007 2.3e-08 62.8 81 55.6
Cpa.g.sc111.26 Carica papaya HOM05D002248 ORTHO05D006007 2.3e-08 62.8 82 56.1
CsaV3_1G005660 Cucumis sativus L. HOM05D002248 ORTHO05D006007 2.3e-08 62.8 43 74.4
Thhalv10004743m.g Eutrema salsugineum HOM05D002248 ORTHO05D006007 2.3e-08 62.8 77 53.2
Thhalv10014361m.g Eutrema salsugineum HOM05D002248 ORTHO05D006007 2.3e-08 62.8 57 68.4
FvH4_5g14630 Fragaria vesca HOM05D002248 ORTHO05D006007 2.3e-08 62.8 43 76.7
FAN08G3426 Fragaria x ananassa HOM05D002248 ORTHO05D006007 2.3e-08 62.8 43 76.7
FAN18G0552 Fragaria x ananassa HOM05D002248 ORTHO05D006007 2.3e-08 62.8 43 76.7
Sed0004299 Sechium edule HOM05D002248 ORTHO05D006007 2.3e-08 62.8 53 66.0
Solyc03g115820.3 Solanum lycopersicum HOM05D002248 ORTHO05D006007 2.3e-08 62.8 86 48.8
BcaC06g32499 Brassica carinata HOM05D002248 ORTHO05D006007 3.1e-08 62.4 73 53.4
Nn3g17307 Nelumbo nucifera HOM05D002248 ORTHO05D006007 3.1e-08 62.4 43 72.1
Nn4g23250 Nelumbo nucifera HOM05D002248 ORTHO05D006007 3.1e-08 62.4 82 50.0
Oeu052448.1 Olea europaea HOM05D002248 ORTHO05D006007 3.1e-08 62.4 45 71.1
THA.LOC104801478 Tarenaya hassleriana HOM05D002248 ORTHO05D006007 3.1e-08 62.4 81 50.6
Actinidia04873 Actinidia chinensis HOM05D002248 ORTHO05D006007 4.0e-08 62.0 45 68.9
AL8G38080 Arabidopsis lyrata HOM05D002248 ORTHO05D006007 4.0e-08 62.0 81 54.3
CiPaw.11G046800 Carya illinoinensis HOM05D002248 ORTHO05D006007 4.0e-08 62.0 43 74.4
Dinv10650 Davidia involucrata HOM05D002248 ORTHO05D006007 4.0e-08 62.0 34 91.2
HanXRQChr08g0236701 Helianthus annuus HOM05D002248 ORTHO05D006007 4.0e-08 62.0 42 73.8
SGA_v2.0_scaffold313G48336 Striga asiatica HOM05D001764 ORTHO05D001946 4.0e-08 62.0 77 54.5
AT5G61410 Arabidopsis thaliana HOM05D002248 ORTHO05D006007 5.2e-08 61.6 81 53.1
A02p41690 Brassica napus HOM05D002248 ORTHO05D006007 5.2e-08 61.6 40 80.0
C02p61620 Brassica napus HOM05D002248 ORTHO05D041756 5.2e-08 61.6 40 80.0
Carub.0008s2208 Capsella rubella HOM05D002248 ORTHO05D006007 5.2e-08 61.6 81 54.3
SMO172G0181 Selaginella moellendorffii HOM05D002248 ORTHO05D006007 5.2e-08 61.6 60 61.7
BcaC06g32412 Brassica carinata HOM05D002248 ORTHO05D006007 6.8e-08 61.2 72 51.4
C09p69780 Brassica napus HOM05D002248 ORTHO05D006007 6.8e-08 61.2 72 51.4
BolC9t59723H Brassica oleracea HOM05D001764 ORTHO05D001946 6.8e-08 61.2 72 51.4
Hma1.2p1_0322F.1_g125080 Hydrangea macrophylla HOM05D002248 ORTHO05D006007 6.8e-08 61.2 58 60.3
SalBow5G3171 Salvia bowleyana HOM05D002248 ORTHO05D006007 6.8e-08 61.2 74 50.0
vmacro17566 Vaccinium macrocarpon HOM05D002248 ORTHO05D006007 6.8e-08 61.2 38 84.2
Actinidia37614 Actinidia chinensis HOM05D002248 ORTHO05D006007 8.9e-08 60.8 38 78.9
ATR1120G124 Amborella trichopoda HOM05D002248 ORTHO05D006007 8.9e-08 60.8 75 50.7
MELO3C001998.2 Cucumis melo HOM05D002248 ORTHO05D006007 8.9e-08 60.8 43 72.1
Pp3c1_8270 Physcomitrium patens HOM05D002248 ORTHO05D006007 8.9e-08 60.8 56 58.9
SGA_v2.0_scaffold25G10930 Striga asiatica HOM05D002248 ORTHO05D006007 8.9e-08 60.8 76 52.6
MSTRG.23005 Avicennia marina HOM05D002248 ORTHO05D006007 1.2e-07 60.5 43 72.1
A10p29400 Brassica napus HOM05D002248 ORTHO05D006007 1.2e-07 60.5 42 78.6
BraA10t44984Z Brassica rapa HOM05D002248 ORTHO05D006007 1.2e-07 60.5 42 78.6
AUR62008442 Chenopodium quinoa HOM05D002248 ORTHO05D006007 1.2e-07 60.5 38 84.2
Sp6g35190 Schrenkiella parvula HOM05D001764 ORTHO05D001946 1.2e-07 60.5 42 81.0
Sed0022071 Sechium edule HOM05D002248 ORTHO05D006007 1.2e-07 60.5 43 72.1
Hund02631 Selenicereus undatus HOM05D002248 ORTHO05D006007 1.2e-07 60.5 52 67.3
AagrBONN_evm.TU.Sc2ySwM_117.3292 Anthoceros agrestis HOM05D002248 ORTHO05D006007 1.5e-07 60.1 66 57.6
BcaC06g33246 Brassica carinata HOM05D002248 ORTHO05D006007 2.0e-07 59.7 75 50.7
A03p46990 Brassica napus HOM05D002248 ORTHO05D006007 2.0e-07 59.7 80 51.2
C07p45030 Brassica napus HOM05D002248 ORTHO05D006007 2.0e-07 59.7 75 50.7
BolC7t45026H Brassica oleracea HOM05D002248 ORTHO05D006007 2.0e-07 59.7 75 50.7
CSS0027332 Camellia sinensis var. sinensis HOM05D002248 ORTHO05D006007 2.0e-07 59.7 76 55.3
Cc04_g15130 Coffea canephora HOM05D002248 ORTHO05D006007 2.0e-07 59.7 81 49.4
Lsat_1_v5_gn_1_14260 Lactuca sativa HOM05D002248 ORTHO05D006007 2.6e-07 59.3 38 86.8
EL10Ac5g11050 Beta vulgaris HOM05D002248 ORTHO05D006007 3.4e-07 58.9 38 84.2
BraA03t13823Z Brassica rapa HOM05D002248 ORTHO05D006007 3.4e-07 58.9 33 87.9
CDE09G0980 Ceratophyllum demersum HOM05D002248 ORTHO05D006007 3.4e-07 58.9 75 52.0
Mapoly0016s0134 Marchantia polymorpha HOM05D002248 ORTHO05D006007 4.4e-07 58.5 84 47.6
Zm00001eb005330 Zea mays HOM05D002248 ORTHO05D006007 4.4e-07 58.5 48 68.8
Zm00001eb402390 Zea mays HOM05D002248 ORTHO05D006007 4.4e-07 58.5 48 68.8
HanXRQChr02g0043141 Helianthus annuus HOM05D002248 ORTHO05D006007 5.8e-07 58.2 81 53.1
ECA246G4213 Erigeron canadensis HOM05D002248 ORTHO05D006007 7.5e-07 57.8 38 73.7
ECA247G3852 Erigeron canadensis HOM05D002248 ORTHO05D006007 7.5e-07 57.8 80 51.2
Os03g0169100 Oryza sativa ssp. japonica HOM05D002248 ORTHO05D006007 7.5e-07 57.8 75 53.3
Pp3c11_3710 Physcomitrium patens HOM05D002248 ORTHO05D006007 7.5e-07 57.8 56 60.7
CDE02G3947 Ceratophyllum demersum HOM05D002248 ORTHO05D006007 1.7e-06 56.6 75 49.3
CANSAT80G1309 Cannabis sativa HOM05D002248 ORTHO05D006007 4.9e-06 55.1 81 50.6


User provided reference genes

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