Gene: AT5G61410

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G61410
  • Transcript Identifier AT5G61410.1
  • Gene Type Coding gene
  • Location Chr5 : 24684085-24685836 : negative

Gene Family Information

  • ID HOM05D002248
  • #Genes/#Species 300/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G61410.1
  • symbol RPE
  • Alias EMB2728,EMBRYO DEFECTIVE 2728
  • uniprot Q9SAU2

Descriptions

  • Description D-ribulose-5-phosphate-3-epimerase
  • Computational description D-ribulose-5-phosphate-3-epimerase (RPE); FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: response to cold, carbohydrate metabolic process, response to nematode, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 9137 Blast hits to 9136 proteins in 2615 species: Archae - 52; Bacteria - 5574; Metazoa - 174; Fungi - 138; Plants - 190; Viruses - 0; Other Eukaryotes - 3009 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0006098
IEA
GOA Databasepentose-phosphate shunt
GO:0006098
IEA
InterPropentose-phosphate shunt
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy
GO:0019253
IEA
Gene Ontologyreductive pentose-phosphate cycle
GO:0009409
IEP
Gene Ontologyresponse to cold1
GO:0009624
IMP
Gene Ontologyresponse to nematode2
GO:0019323
IBA
Gene Ontologypentose catabolic process3
GO:0044262
IBA
Gene Ontologycellular carbohydrate metabolic process3
GO:0009052
IBA
Gene Ontologypentose-phosphate shunt, non-oxidative branch3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IBA
Gene Ontologymetal ion binding3
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016857
IEA
GOA Databaseracemase and epimerase activity, acting on carbohydrates and derivatives
GO:0016857
IEA
InterProracemase and epimerase activity, acting on carbohydrates and derivatives
GO:0004750
IEA
GOA Databaseribulose-phosphate 3-epimerase activity
GO:0004750
IBA
Gene Ontologyribulose-phosphate 3-epimerase activity3
GO:0004750
IEA
InterProribulose-phosphate 3-epimerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009579
IDA
IEA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid4
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope5
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast6
GO:0048046
IDA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast7
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid8
GO:0016020
IEA
GOA Databasemembrane
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma9
GO:0010319
IDA
Gene Ontologystromule1
GO:0005829
IBA
Gene Ontologycytosol3
GO:0009535
IEA
GOA Databasechloroplast thylakoid membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013785 Aldolase-type TIM barrel
IPR000056 Ribulose-phosphate 3-epimerase-like
IPR011060 Ribulose-phosphate binding barrel
IPR026019 Ribulose-phosphate 3-epimerase
Mapman id Description
1.2.10 Photosynthesis.calvin cycle.phosphopentose epimerase