Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.4e-300 1035.4 501 100.0
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.7e-120 437.2 519 45.9
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.3e-115 418.3 512 47.5
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.8e-114 417.2 509 46.4
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 3.1e-114 416.4 484 47.9
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 7.0e-114 415.2 497 47.5
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 7.0e-114 415.2 497 47.5
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-113 414.5 509 46.4
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.0e-113 413.7 481 47.0
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 2.0e-113 413.7 512 45.9
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.5e-113 412.5 513 46.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 4.5e-113 412.5 519 45.1
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 7.7e-113 411.8 500 43.6
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 7.7e-113 411.8 511 45.4
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.0e-112 411.4 476 47.1
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.7e-112 410.6 513 45.8
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.9e-112 409.8 514 45.5
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 3.8e-112 409.5 476 46.8
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 5.0e-112 409.1 481 46.8
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 5.0e-112 409.1 510 45.3
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 5.0e-112 409.1 478 46.7
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 6.5e-112 408.7 485 45.8
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 8.5e-112 408.3 487 47.2
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.5e-111 407.5 484 47.7
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.5e-111 407.5 511 45.0
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.9e-111 407.1 509 43.8
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 1.9e-111 407.1 475 47.8
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.5e-111 406.8 497 44.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 2.5e-111 406.8 490 46.3
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 3.2e-111 406.4 498 46.4
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.2e-110 404.4 518 45.0
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.6e-110 404.1 515 45.2
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.1e-110 403.7 497 45.5
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.7e-110 403.3 482 47.3
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.6e-110 402.9 512 45.1
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 3.6e-110 402.9 511 44.8
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 3.6e-110 402.9 518 45.2
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 3.6e-110 402.9 490 46.5
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.7e-110 402.5 510 44.3
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 6.1e-110 402.1 495 44.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 8.0e-110 401.7 512 44.7
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 8.0e-110 401.7 486 47.1
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 8.0e-110 401.7 513 43.9
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-109 401.4 511 44.8
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.0e-109 401.4 511 44.8
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.4e-109 401.0 498 46.0
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.8e-109 400.6 512 44.3
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.8e-109 400.6 497 45.5
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 3.0e-109 399.8 522 45.0
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 3.0e-109 399.8 493 45.8
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 4.0e-109 399.4 498 45.4
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.2e-109 399.1 496 46.4
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 6.8e-109 398.7 509 44.6
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 6.8e-109 398.7 515 45.0
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 8.8e-109 398.3 526 45.1
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.5e-108 397.5 531 43.1
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 2.0e-108 397.1 497 45.5
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.0e-108 397.1 529 42.9
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 2.6e-108 396.7 512 44.3
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 3.4e-108 396.4 469 46.9
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.4e-108 396.0 513 45.2
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 5.7e-108 395.6 506 43.7
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.7e-108 395.6 521 44.1
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 7.5e-108 395.2 518 44.2
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 7.5e-108 395.2 485 45.4
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 9.8e-108 394.8 515 43.9
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 9.8e-108 394.8 521 44.0
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.3e-107 394.4 521 44.0
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.7e-107 394.0 529 42.7
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.1e-106 391.3 501 45.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.4e-106 391.0 498 44.2
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.8e-106 390.6 505 44.2
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.8e-106 390.6 510 43.3
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.4e-106 390.2 521 44.0
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 3.1e-106 389.8 533 43.2
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 4.1e-106 389.4 495 44.6
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 4.1e-106 389.4 497 44.7
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 5.4e-106 389.0 480 45.0
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.4e-106 389.0 513 44.2
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 7.0e-106 388.7 506 43.1
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 9.1e-106 388.3 514 43.8
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.6e-105 387.5 510 43.1
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.0e-105 387.1 499 43.7
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.0e-105 387.1 515 43.7
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 2.7e-105 386.7 511 43.4
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 3.5e-105 386.3 526 43.7
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 4.5e-105 386.0 511 43.4
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 4.5e-105 386.0 500 46.0
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 5.9e-105 385.6 508 43.9
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 5.9e-105 385.6 493 45.2
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 5.9e-105 385.6 514 44.4
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 7.7e-105 385.2 489 44.8
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 7.7e-105 385.2 514 44.2
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.3e-104 384.4 520 43.3
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.3e-104 384.4 531 42.2
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 1.7e-104 384.0 525 44.0
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.7e-104 384.0 511 44.6
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 5.0e-104 382.5 505 42.0
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.0e-104 382.5 491 44.4
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 8.6e-104 381.7 483 44.7
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.1e-103 381.3 485 44.5
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-103 380.9 509 43.8
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 2.5e-103 380.2 507 43.6
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 3.3e-103 379.8 485 44.3
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 3.3e-103 379.8 513 43.7
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 4.2e-103 379.4 481 43.5
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.2e-102 377.9 527 42.1
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.2e-102 377.9 483 43.9
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.6e-102 377.5 505 43.8
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.6e-102 377.5 491 44.0
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 8.0e-102 375.2 513 42.9
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.0e-102 375.2 488 43.4
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.0e-101 374.8 505 44.4
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.4e-101 374.4 508 41.5
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.4e-101 374.4 481 46.6
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.3e-101 373.6 488 44.1
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.5e-100 370.9 491 41.8
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.4e-100 369.8 494 43.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.7e-99 367.5 496 43.3
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.2e-99 367.1 495 43.4
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.2e-99 367.1 521 42.2
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.2e-99 367.1 553 42.0
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.8e-98 364.0 496 42.7
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.8e-98 364.0 426 47.7
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.8e-98 364.0 417 48.4
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.8e-98 364.0 484 42.1
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 5.4e-98 362.5 478 43.7
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 7.0e-98 362.1 491 41.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 9.2e-98 361.7 496 42.9
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 7.8e-97 358.6 490 42.7
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 1.0e-96 358.2 407 46.9
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.0e-96 358.2 511 41.5
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.3e-96 357.8 412 47.3
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.5e-95 354.4 429 45.7
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 4.3e-95 352.8 493 42.4
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 8.0e-94 348.6 490 41.8
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 1.0e-93 348.2 494 41.5
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.0e-93 348.2 508 40.6
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.3e-91 341.3 529 39.9
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 9.2e-90 335.1 461 43.0
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 8.6e-88 328.6 402 46.0
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 7.3e-87 325.5 518 36.5
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.8e-85 320.9 386 47.2
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 6.8e-85 318.9 321 50.8
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 8.9e-85 318.5 541 36.4
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.8e-77 294.3 578 32.2
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 2.3e-77 293.9 356 46.1
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.7e-75 287.7 568 32.4
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.8e-67 260.0 253 53.4
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.7e-64 251.1 556 32.2
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 4.4e-60 236.5 226 51.3
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.4e-58 231.5 257 48.2
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.5e-52 211.5 528 30.5
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.5e-49 200.3 375 35.2
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.1e-37 162.2 194 44.3
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.0e-32 144.1 100 64.0
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.4e-29 135.2 227 36.1
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 4.2e-26 123.6 230 36.5
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 2.9e-19 100.9 115 47.0
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 5.7e-15 86.7 584 19.0
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.7e-14 85.1 556 23.4
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.6e-12 77.8 108 45.4
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.9e-12 76.6 112 45.5
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.9e-12 76.6 112 45.5
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.2e-11 74.7 108 45.4
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.1e-09 68.2 120 35.0
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.0e-09 66.2 90 43.3
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.4e-07 60.5 111 37.8


User provided reference genes

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