Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 4.2e-101 371.3 184 100.0
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.3e-78 295.8 182 73.1
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.5e-77 293.1 182 72.0
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.9e-77 292.7 179 74.3
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.9e-77 292.7 182 73.6
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 3.3e-77 292.0 179 73.7
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 4.3e-77 291.6 183 73.8
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.6e-77 291.2 182 73.6
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 7.3e-77 290.8 182 73.6
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 9.5e-77 290.4 182 73.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.2e-76 290.0 184 71.7
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.6e-76 289.7 182 72.5
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.6e-76 289.7 182 72.0
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.1e-76 289.3 184 72.3
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.1e-76 289.3 182 72.5
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.8e-76 288.9 182 72.5
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.8e-76 288.9 182 72.5
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.8e-76 288.9 182 72.0
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.6e-76 288.5 182 72.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.7e-76 288.1 177 74.0
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 4.7e-76 288.1 182 73.6
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 73.6
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 73.1
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 8.1e-76 287.3 182 72.0
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 8.1e-76 287.3 182 72.0
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 8.1e-76 287.3 182 72.0
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 1.1e-75 287.0 182 70.9
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.1e-75 287.0 182 70.9
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.1e-75 287.0 182 73.6
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.8e-75 286.2 182 70.9
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.8e-75 286.2 182 72.0
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 3.1e-75 285.4 182 71.4
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 4.0e-75 285.0 178 73.0
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 5.2e-75 284.6 182 69.8
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 5.2e-75 284.6 182 70.9
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 6.8e-75 284.3 182 72.5
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 8.9e-75 283.9 182 71.4
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.2e-74 283.5 182 69.8
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.5e-74 283.1 183 72.1
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 2.0e-74 282.7 182 69.8
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 2.0e-74 282.7 182 70.9
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 69.8
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 69.8
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 71.4
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 70.9
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 3.4e-74 282.0 177 72.9
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.4e-74 282.0 177 72.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 69.2
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 4.4e-74 281.6 182 71.4
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.9e-74 280.4 182 69.2
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 9.9e-74 280.4 182 69.2
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.3e-73 280.0 180 69.4
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.3e-73 280.0 182 72.0
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 182 72.0
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.2e-73 279.3 182 67.6
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.2e-73 279.3 182 67.6
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 4.9e-73 278.1 179 68.7
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 6.4e-73 277.7 182 68.1
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 8.3e-73 277.3 182 68.1
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.1e-72 276.9 182 69.2
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.9e-72 276.2 177 70.1
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.1e-72 275.0 180 68.3
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 5.4e-72 274.6 178 71.9
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.2e-71 273.5 182 67.6
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.2e-71 273.5 179 67.6
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.1e-71 272.7 182 67.0
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.1e-71 272.7 182 67.0
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 2.7e-71 272.3 178 69.1
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.7e-71 272.3 182 67.0
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.5e-71 271.9 182 68.1
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 4.6e-71 271.6 182 68.7
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 6.0e-71 271.2 182 68.1
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 7.8e-71 270.8 182 67.0
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.7e-70 269.6 182 67.0
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 67.0
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 67.6
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 66.5
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.0e-70 268.9 182 65.9
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 5.1e-70 268.1 182 66.5
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 5.1e-70 268.1 183 67.2
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 5.1e-70 268.1 182 66.5
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 6.6e-70 267.7 182 67.6
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.6e-70 267.7 182 65.4
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.5e-69 266.5 182 65.9
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.9e-69 266.2 182 65.9
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 2.5e-69 265.8 178 66.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 3.3e-69 265.4 182 65.9
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.3e-69 265.0 182 65.4
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 5.6e-69 264.6 182 67.0
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 7.3e-69 264.2 184 66.3
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 9.6e-69 263.8 182 70.3
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.6e-68 261.9 184 65.8
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 6.2e-68 261.2 182 64.8
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.1e-67 260.4 182 64.8
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.4e-67 260.0 180 65.6
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.8e-67 259.6 181 65.2
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.8e-67 259.6 182 64.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.4e-67 259.2 180 64.4
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 2.4e-67 259.2 182 66.5
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 2.4e-67 259.2 182 66.5
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 4.0e-67 258.5 182 65.9
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 4.0e-67 258.5 182 65.9
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 4.0e-67 258.5 182 65.9
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 5.2e-67 258.1 180 65.6
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 6.8e-67 257.7 180 65.6
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 6.8e-67 257.7 183 63.9
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.2e-66 256.9 183 63.4
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.2e-66 256.9 179 64.8
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 5.8e-66 254.6 183 63.9
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 5.8e-66 254.6 177 65.0
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 7.6e-66 254.2 183 65.6
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 9.9e-66 253.8 191 64.9
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.7e-65 253.1 170 70.6
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 2.9e-65 252.3 183 62.8
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.8e-65 251.9 179 65.4
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 3.8e-65 251.9 185 63.2
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 6.4e-65 251.1 178 61.8
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 8.4e-65 250.8 183 63.9
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 2.7e-63 245.7 180 62.8
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 1.3e-62 243.4 179 61.5
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.7e-62 243.0 175 62.9
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 3.9e-62 241.9 177 63.8
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 8.7e-62 240.7 182 59.9
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.1e-61 240.4 180 63.3
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 4.8e-60 235.0 177 60.5
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 8.1e-60 234.2 179 60.3
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 5.8e-58 228.0 186 57.0
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 9.9e-58 227.3 182 57.1
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.1e-56 223.8 180 58.9
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 6.0e-55 218.0 180 58.9
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 6.2e-52 208.0 182 58.2
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.8e-51 206.5 180 53.9
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 4.5e-50 201.8 184 55.4
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.4e-48 196.8 163 58.9
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 2.1e-47 193.0 183 47.0
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.1e-45 187.2 197 50.3
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.0e-42 176.4 116 68.1
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 6.5e-41 171.4 115 63.5
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 4.8e-36 155.2 157 48.4
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 7.7e-26 121.3 76 75.0
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 9.4e-24 114.4 109 50.5
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.4e-22 110.5 97 49.5
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 3.8e-17 92.4 165 32.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 6.7e-14 81.6 52 67.3
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 3.5e-10 69.3 59 52.5
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 7.7e-10 68.2 55 54.5
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 7.2e-08 61.6 38 71.1


User provided reference genes

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