Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23190 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.6e-99 365.9 170 100.0
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 1.4e-34 150.2 112 57.1
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 2.7e-33 146.0 106 59.4
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 7.8e-33 144.4 107 57.0
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 5.1e-32 141.7 106 58.5
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 2.5e-31 139.4 112 55.4
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 5.6e-31 138.3 113 52.2
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 7.3e-31 137.9 104 54.8
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 1.2e-30 137.1 112 52.7
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.6e-30 136.7 107 54.2
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 2.1e-30 136.3 112 51.8
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 2.8e-30 136.0 112 52.7
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 2.8e-30 136.0 112 50.9
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 3.6e-30 135.6 115 47.0
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 3.6e-30 135.6 105 57.1
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 1.4e-29 133.7 107 52.3
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 2.3e-29 132.9 112 51.8
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 2.3e-29 132.9 115 49.6
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 3.1e-29 132.5 111 53.2
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 4.0e-29 132.1 104 53.8
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 6.8e-29 131.3 107 49.5
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 6.8e-29 131.3 114 50.0
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 1.2e-28 130.6 104 52.9
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.2e-28 130.6 113 49.6
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 1.2e-28 130.6 106 53.8
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.5e-28 130.2 112 49.1
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 1.5e-28 130.2 109 50.5
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 2.0e-28 129.8 112 48.2
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 2.6e-28 129.4 109 49.5
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 2.6e-28 129.4 105 52.4
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 3.4e-28 129.0 106 52.8
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 7.6e-28 127.9 105 51.4
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 7.6e-28 127.9 109 48.6
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 7.6e-28 127.9 112 48.2
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 7.6e-28 127.9 112 47.3
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 7.6e-28 127.9 103 51.5
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 9.9e-28 127.5 109 47.7
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 9.9e-28 127.5 115 47.0
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 9.9e-28 127.5 107 50.5
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 9.9e-28 127.5 107 50.5
Hma1.2p1_0071F.1_g037910 Hydrangea macrophylla HOM05D004707 ORTHO05D005837 1.3e-27 127.1 100 53.0
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 1.3e-27 127.1 107 53.3
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.7e-27 126.7 107 50.5
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 2.2e-27 126.3 112 50.9
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 2.2e-27 126.3 107 48.6
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 2.2e-27 126.3 122 48.4
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 2.9e-27 125.9 104 51.0
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 3.8e-27 125.6 105 50.5
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.9e-27 125.2 107 49.5
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.9e-27 125.2 107 49.5
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.9e-27 125.2 107 48.6
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 4.9e-27 125.2 105 50.5
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 4.9e-27 125.2 104 48.1
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 4.9e-27 125.2 105 50.5
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 4.9e-27 125.2 107 49.5
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 8.4e-27 124.4 109 46.8
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 8.4e-27 124.4 109 46.8
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 8.4e-27 124.4 105 50.5
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 8.4e-27 124.4 114 46.5
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 8.4e-27 124.4 120 44.2
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 1.4e-26 123.6 103 49.5
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 1.4e-26 123.6 103 49.5
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 1.4e-26 123.6 112 48.2
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 1.4e-26 123.6 112 47.3
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 1.9e-26 123.2 116 46.6
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 1.9e-26 123.2 116 46.6
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.9e-26 123.2 107 50.5
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 2.4e-26 122.9 106 49.1
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 3.2e-26 122.5 105 52.4
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 4.1e-26 122.1 120 44.2
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 4.1e-26 122.1 102 50.0
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 4.1e-26 122.1 102 50.0
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 5.4e-26 121.7 103 48.5
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 5.4e-26 121.7 105 47.6
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 7.1e-26 121.3 107 46.7
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 7.1e-26 121.3 102 49.0
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 2.1e-25 119.8 107 49.5
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 2.7e-25 119.4 107 46.7
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 2.7e-25 119.4 108 48.1
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 3.5e-25 119.0 115 45.2
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 3.5e-25 119.0 114 45.6
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 3.5e-25 119.0 107 50.5
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 4.6e-25 118.6 105 46.7
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 4.6e-25 118.6 111 48.6
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 4.6e-25 118.6 102 46.1
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 7.8e-25 117.9 109 44.0
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 7.8e-25 117.9 112 45.5
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 7.8e-25 117.9 102 47.1
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 1.3e-24 117.1 120 42.5
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 1.3e-24 117.1 114 43.9
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 1.7e-24 116.7 114 43.9
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.3e-24 116.3 113 45.1
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 3.9e-24 115.5 112 42.9
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 5.1e-24 115.2 103 47.6
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 3.3e-23 112.5 97 54.6
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 9.6e-23 110.9 110 43.6
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 2.8e-22 109.4 107 44.9
Cpa.g.sc11.48 Carica papaya HOM05D004707 ORTHO05D005837 4.7e-22 108.6 90 50.0
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 1.4e-21 107.1 113 41.6
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.4e-21 107.1 104 45.2
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 5.2e-21 105.1 98 46.9
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 5.8e-20 101.7 113 38.9
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 7.6e-20 101.3 105 41.9
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.2e-17 94.0 112 34.8
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.6e-17 93.6 75 49.3
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.3e-16 90.5 101 42.6
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 3.0e-16 89.4 73 45.2
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 8.7e-16 87.8 83 44.6
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 3.3e-15 85.9 75 45.3
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 7.3e-15 84.7 153 31.4
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 4.5e-12 75.5 106 35.8
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.3e-11 73.9 83 32.5
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 2.3e-08 63.2 72 38.9
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 3.0e-08 62.8 105 27.6
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.5e-07 60.5 113 31.0
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.5e-07 60.5 113 31.0
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.5e-07 60.5 51 54.9
SEGI_32416 Sequoiadendron giganteum HOM05D000104 ORTHO05D019205 4.8e-06 55.5 46 58.7


User provided reference genes

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