Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23097 Sequoiadendron giganteum HOM05D002168 ORTHO05D002277 2.0e-115 419.1 211 100.0
Os07g0168000 Oryza sativa ssp. japonica HOM05D002168 ORTHO05D002277 2.6e-38 162.9 160 54.4
CAN.G9.1 Capsicum annuum HOM05D002168 ORTHO05D002277 1.0e-37 161.0 160 56.2
MELO3C009794.2 Cucumis melo HOM05D002168 ORTHO05D002277 3.8e-37 159.1 161 54.7
Eucgr.A02140 Eucalyptus grandis HOM05D002168 ORTHO05D002277 8.5e-37 157.9 162 51.2
PSO339G1487 Papaver somniferum HOM05D002168 ORTHO05D002277 8.5e-37 157.9 162 51.2
PSO384G3331 Papaver somniferum HOM05D002168 ORTHO05D002277 8.5e-37 157.9 162 51.2
Dinv25043 Davidia involucrata HOM05D002168 ORTHO05D002277 1.1e-36 157.5 162 52.5
Lj1g0016812 Lotus japonicus HOM05D002168 ORTHO05D002277 1.1e-36 157.5 163 55.8
Cc06_g21470 Coffea canephora HOM05D002168 ORTHO05D002277 1.4e-36 157.1 161 55.3
CsaV3_3G040620 Cucumis sativus L. HOM05D002168 ORTHO05D002277 1.4e-36 157.1 161 54.0
PGR042G1483 Punica granatum HOM05D002168 ORTHO05D002277 1.4e-36 157.1 162 52.5
DCAR_016962 Daucus carota HOM05D002168 ORTHO05D002277 1.9e-36 156.8 162 54.3
TWI32G0897 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 1.9e-36 156.8 162 53.7
Sopen08g019820 Solanum pennellii HOM05D002168 ORTHO05D002277 2.5e-36 156.4 160 55.0
TAR633G2049 Trochodendron aralioides HOM05D002168 ORTHO05D002277 3.2e-36 156.0 161 52.2
Manes.08G153100 Manihot esculenta HOM05D002168 ORTHO05D002277 4.2e-36 155.6 162 52.5
Medtr7g086640 Medicago truncatula HOM05D002168 ORTHO05D002277 7.2e-36 154.8 163 54.0
Prupe.7G014600 Prunus persica HOM05D002168 ORTHO05D002277 9.4e-36 154.5 162 52.5
Zm00001eb300920 Zea mays HOM05D002168 ORTHO05D002277 9.4e-36 154.5 160 53.1
MD14G1008000 Malus domestica HOM05D002168 ORTHO05D002277 1.2e-35 154.1 162 53.7
Rhsim03G0049500 Rhododendron simsii HOM05D002168 ORTHO05D002277 1.2e-35 154.1 159 50.9
CiPaw.09G166700 Carya illinoinensis HOM05D002168 ORTHO05D002277 1.6e-35 153.7 162 52.5
ECA238G2164 Erigeron canadensis HOM05D002168 ORTHO05D002277 1.6e-35 153.7 160 50.6
unitig_60.g25486 Utricularia gibba HOM05D002168 ORTHO05D002277 1.6e-35 153.7 159 52.8
Peaxi162Scf01421g00012 Petunia axillaris HOM05D002168 ORTHO05D002277 2.7e-35 152.9 160 52.5
SalBow6G0718 Salvia bowleyana HOM05D002168 ORTHO05D002277 2.7e-35 152.9 162 48.8
SalBow6G2962 Salvia bowleyana HOM05D002168 ORTHO05D002277 2.7e-35 152.9 162 48.8
Haze_20409 Corylus avellana HOM05D002168 ORTHO05D002277 4.6e-35 152.1 162 53.1
vmacro07652 Vaccinium macrocarpon HOM05D002168 ORTHO05D002277 4.6e-35 152.1 162 50.6
Aqoxy1G00512 Aquilegia oxysepala HOM05D002168 ORTHO05D002277 6.1e-35 151.8 160 51.9
Lsat_1_v5_gn_2_103701 Lactuca sativa HOM05D002168 ORTHO05D002277 6.1e-35 151.8 158 51.9
Sed0008218 Sechium edule HOM05D002168 ORTHO05D002277 7.9e-35 151.4 160 53.1
TPR.G34788 Trifolium pratense HOM05D002168 ORTHO05D002277 7.9e-35 151.4 162 54.3
Atru.chr2.1517 Acer truncatum HOM05D002168 ORTHO05D002277 1.0e-34 151.0 162 49.4
Actinidia03921 Actinidia chinensis HOM05D002168 ORTHO05D002277 1.0e-34 151.0 162 50.6
MD12G1011400 Malus domestica HOM05D002168 ORTHO05D002277 1.0e-34 151.0 161 52.8
Sc07g0007450 Simmondsia chinensis HOM05D002168 ORTHO05D002277 1.0e-34 151.0 160 50.6
RcHm_v2.0_Chr3g0496111 Rosa chinensis HOM05D002168 ORTHO05D002277 1.4e-34 150.6 162 53.1
VMungo1383G0989 Vigna mungo HOM05D002168 ORTHO05D002277 1.4e-34 150.6 161 52.8
arahy.Tifrunner.gnm1.ann1.B3FMDE Arachis hypogaea HOM05D002168 ORTHO05D002277 2.3e-34 149.8 163 53.4
Glyma.16G036100 Glycine max HOM05D002168 ORTHO05D002277 2.3e-34 149.8 163 52.1
arahy.Tifrunner.gnm1.ann1.V0KP8I Arachis hypogaea HOM05D002168 ORTHO05D002277 3.0e-34 149.4 163 53.4
BcaB04g19361 Brassica carinata HOM05D002168 ORTHO05D002277 3.0e-34 149.4 161 52.8
Potri.019G040100 Populus trichocarpa HOM05D002168 ORTHO05D002277 3.0e-34 149.4 161 52.2
Sabra19G0050400 Salix brachista HOM05D002168 ORTHO05D002277 3.0e-34 149.4 161 50.9
SGA_v2.0_scaffold69G23217 Striga asiatica HOM05D002168 ORTHO05D002277 3.0e-34 149.4 160 48.8
A05p43660 Brassica napus HOM05D002168 ORTHO05D002277 3.9e-34 149.1 161 52.8
BraA05t23104Z Brassica rapa HOM05D002168 ORTHO05D002277 3.9e-34 149.1 161 52.8
Ciclev10019242m.g Citrus clementina HOM05D002168 ORTHO05D002277 3.9e-34 149.1 162 51.9
BcaC05g30255 Brassica carinata HOM05D002168 ORTHO05D002277 5.1e-34 148.7 161 52.2
Ca_08312_v3 Cicer arietinum L. HOM05D002168 ORTHO05D002277 5.1e-34 148.7 165 54.5
Sp3g02680 Schrenkiella parvula HOM05D002168 ORTHO05D002277 5.1e-34 148.7 161 52.8
BcaC05g30538 Brassica carinata HOM05D002168 ORTHO05D002277 6.7e-34 148.3 168 51.2
THA.LOC104802884 Tarenaya hassleriana HOM05D002168 ORTHO05D002277 6.7e-34 148.3 161 53.4
Thhalv10020014m.g Eutrema salsugineum HOM05D002168 ORTHO05D002277 8.8e-34 147.9 161 52.8
FAN28G1730 Fragaria x ananassa HOM05D002168 ORTHO05D002277 8.8e-34 147.9 162 52.5
GSVIVG01029958001 Vitis vinifera HOM05D002168 ORTHO05D002277 1.1e-33 147.5 162 51.2
Glyma.19G116700 Glycine max HOM05D002168 ORTHO05D002277 1.5e-33 147.1 163 51.5
Sabra13G0057400 Salix brachista HOM05D002168 ORTHO05D002277 1.5e-33 147.1 161 50.9
Dinv13788 Davidia involucrata HOM05D002168 ORTHO05D002277 2.0e-33 146.7 157 51.0
CARHR077770 Cardamine hirsuta HOM05D002168 ORTHO05D002277 2.5e-33 146.4 161 52.2
Nn2g14555 Nelumbo nucifera HOM05D002168 ORTHO05D002277 2.5e-33 146.4 164 48.8
Thecc.05G242400 Theobroma cacao HOM05D002168 ORTHO05D002277 2.5e-33 146.4 161 54.0
ATR0697G078 Amborella trichopoda HOM05D002168 ORTHO05D002277 3.3e-33 146.0 162 48.8
C05p63240 Brassica napus HOM05D002168 ORTHO05D002277 3.3e-33 146.0 161 52.2
BolC5t34986H Brassica oleracea HOM05D002168 ORTHO05D002277 3.3e-33 146.0 161 52.2
Potri.013G065700 Populus trichocarpa HOM05D002168 ORTHO05D002277 3.3e-33 146.0 161 49.7
FvH4_1g28580 Fragaria vesca HOM05D002168 ORTHO05D002277 4.3e-33 145.6 162 51.9
Aa31LG5G14220 Aethionema arabicum HOM05D002168 ORTHO05D002277 5.7e-33 145.2 161 52.2
BcaC01g04394 Brassica carinata HOM05D002168 ORTHO05D002277 5.7e-33 145.2 161 51.6
BolC3t16325H Brassica oleracea HOM05D002168 ORTHO05D002277 5.7e-33 145.2 161 51.6
Lalb_Chr14g0364831 Lupinus albus HOM05D002168 ORTHO05D002277 5.7e-33 145.2 163 52.8
Gohir.D11G241200 Gossypium hirsutum HOM05D002168 ORTHO05D002277 7.4e-33 144.8 161 54.7
C03p40600 Brassica napus HOM05D002168 ORTHO05D002277 9.7e-33 144.4 161 51.6
Carub.0003s0287 Capsella rubella HOM05D002168 ORTHO05D002277 9.7e-33 144.4 161 50.9
A03p33360 Brassica napus HOM05D002168 ORTHO05D002277 1.3e-32 144.1 161 51.6
BraA03t12507Z Brassica rapa HOM05D002168 ORTHO05D002277 1.3e-32 144.1 161 51.6
Phvul.001G105633 Phaseolus vulgaris HOM05D002168 ORTHO05D002277 1.3e-32 144.1 163 50.3
AL3G13510 Arabidopsis lyrata HOM05D002168 ORTHO05D002277 1.7e-32 143.7 161 50.9
AT3G03710 Arabidopsis thaliana HOM05D002168 ORTHO05D002277 1.7e-32 143.7 161 50.9
Gorai.007G255300 Gossypium raimondii HOM05D002168 ORTHO05D002277 1.7e-32 143.7 161 54.7
HanXRQChr07g0196271 Helianthus annuus HOM05D002168 ORTHO05D002277 1.7e-32 143.7 160 47.5
FAN26G0197 Fragaria x ananassa HOM05D002168 ORTHO05D002277 2.2e-32 143.3 162 51.2
FAN19G2763 Fragaria x ananassa HOM05D002168 ORTHO05D002277 3.7e-32 142.5 162 51.2
Nitab4.5_0005671g0040 Nicotiana tabacum HOM05D002168 ORTHO05D002277 3.7e-32 142.5 160 50.0
Migut.J01542 Erythranthe guttata HOM05D002168 ORTHO05D002277 4.8e-32 142.1 161 48.4
Gohir.A11G229100 Gossypium hirsutum HOM05D002168 ORTHO05D002277 6.3e-32 141.7 161 54.7
Ah.04g153620 Amaranthus hybridus HOM05D002168 ORTHO05D002277 1.4e-31 140.6 162 50.0
EL10Ac3g06617 Beta vulgaris HOM05D002168 ORTHO05D002277 1.8e-31 140.2 160 50.6
Duzib177G0738 Durio zibethinus HOM05D002168 ORTHO05D002277 6.9e-31 138.3 161 51.6
PGSC0003DMG401007628 Solanum tuberosum HOM05D002168 ORTHO05D002277 9.1e-31 137.9 144 52.8
Solyc08g066120.4 Solanum lycopersicum HOM05D002168 ORTHO05D002277 1.5e-30 137.1 144 52.8
CDE06G2728 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 1.0e-29 134.4 162 48.1
HPP92_014245 Vanilla planifolia HOM05D002168 ORTHO05D002277 1.3e-29 134.0 166 48.8
MBI11_g10545_MAGBIO Magnolia biondii HOM05D002168 ORTHO05D002277 2.2e-29 133.3 193 40.4
HPP92_026507 Vanilla planifolia HOM05D002168 ORTHO05D002277 2.9e-29 132.9 171 48.0
Oeu044206.2 Olea europaea HOM05D002168 ORTHO05D002277 3.8e-29 132.5 227 40.1
Nitab4.5_0000098g0280 Nicotiana tabacum HOM05D002168 ORTHO05D002277 1.2e-27 127.5 133 51.9
AagrBONN_evm.TU.Sc2ySwM_340.482 Anthoceros agrestis HOM05D002168 ORTHO05D002277 3.6e-27 125.9 160 44.4
ClCG10G015830 Citrullus lanatus HOM05D002168 ORTHO05D002277 4.7e-27 125.6 135 51.9
COL.COLO4_28639 Corchorus olitorius HOM05D002168 ORTHO05D002277 7.9e-27 124.8 205 42.4
Mapoly0041s0034 Marchantia polymorpha HOM05D002168 ORTHO05D002277 6.3e-24 115.2 160 41.9
AUR62018085 Chenopodium quinoa HOM05D002168 ORTHO05D002277 3.1e-23 112.8 127 51.2
AUR62032008 Chenopodium quinoa HOM05D002168 ORTHO05D002277 7.0e-23 111.7 127 50.4
CDE07G0416 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 5.9e-22 108.6 129 47.3
Psat0s2078g0040 Pisum sativum HOM05D002168 ORTHO05D002277 1.9e-20 103.6 123 49.6
CSS0041842 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 2.7e-19 99.8 135 46.7
Pp3c6_15550 Physcomitrium patens HOM05D002168 ORTHO05D002277 8.0e-19 98.2 158 38.0
HanXRQChr15g0496011 Helianthus annuus HOM05D002168 ORTHO05D002277 1.0e-18 97.8 158 38.6
SMO364G0479 Selaginella moellendorffii HOM05D002168 ORTHO05D002277 1.1e-15 87.8 160 36.2
HPP92_014137 Vanilla planifolia HOM05D002168 ORTHO05D002277 1.6e-14 84.0 76 50.0
Actinidia37819 Actinidia chinensis HOM05D002168 ORTHO05D002277 8.0e-11 71.6 69 62.3
CBR_g5744 Chara braunii HOM05D002168 ORTHO05D002277 2.3e-10 70.1 174 31.6
Cfa017714 Carpinus fangiana HOM05D002168 ORTHO05D002277 1.7e-08 63.9 138 35.5
Psat3g086960 Pisum sativum HOM05D002168 ORTHO05D002277 5.9e-06 55.5 39 64.1


User provided reference genes

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