Gene: TPR.G34788

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G34788
  • Transcript Identifier TPR.T35973
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_scaf_619 : 17893-37820 : negative

Gene Family Information

  • ID HOM05D002168
  • #Genes/#Species 309/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA35973.v2
  • id Tp57577_TGAC_v2_gene34788.v2
  • pacid 35967003
  • uniprot A0A2K3NCW0

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
ISO
PLAZA Integrative OrthologyRNA catabolic process AT3G03710
GO:0010323
ISO
PLAZA Integrative Orthologynegative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway AT3G03710
GO:0031425
ISO
PLAZA Integrative Orthologychloroplast RNA processing AT3G03710
GO:0016036
ISO
PLAZA Integrative Orthologycellular response to phosphate starvation AT3G03710
GO:0016123
ISO
PLAZA Integrative Orthologyxanthophyll biosynthetic process AT3G03710
GO:0016120
ISO
PLAZA Integrative Orthologycarotene biosynthetic process AT3G03710
GO:0015995
ISO
PLAZA Integrative Orthologychlorophyll biosynthetic process AT3G03710
GO:0006402
IEA
GOA DatabasemRNA catabolic process
GO:0006402
IEA
InterPromRNA catabolic process
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G03710
GO:0000175
ISO
PLAZA Integrative Orthology3'-5'-exoribonuclease activity AT3G03710
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0004654
IEA
GOA Databasepolyribonucleotide nucleotidyltransferase activity
GO:0004654
IEA
InterPropolyribonucleotide nucleotidyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G03710
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G03710

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR036612 K Homology domain, type 1 superfamily
IPR004087 K Homology domain
IPR003029 S1 domain
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR012340 Nucleic acid-binding, OB-fold
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR012162 Polyribonucleotide nucleotidyltransferase
IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR027408 PNPase/RNase PH domain superfamily
IPR022967 RNA-binding domain, S1
Mapman id Description
16.11.1.1 RNA processing.organelle machinery.ribonuclease activities.polynucleotide phosphorylase (PNP)