Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21671 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 1.3e-91 339.7 176 100.0
SEGI_02846 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 1.2e-60 236.9 127 100.0
SEGI_05832 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 6.4e-46 188.0 128 81.2
MBI11_g10486_MAGBIO Magnolia biondii HOM05D004200 ORTHO05D004996 2.3e-43 179.5 127 78.0
ATR0743G001 Amborella trichopoda HOM05D004200 ORTHO05D004996 1.1e-42 177.2 128 75.8
TAR362G0304 Trochodendron aralioides HOM05D004200 ORTHO05D004996 1.9e-42 176.4 128 75.8
TAR633G1708 Trochodendron aralioides HOM05D004200 ORTHO05D004996 1.9e-42 176.4 128 76.6
PSO675G0506 Papaver somniferum HOM05D004200 ORTHO05D004996 4.3e-42 175.3 128 76.6
Atru.chr12.1727 Acer truncatum HOM05D004200 ORTHO05D004996 7.3e-42 174.5 160 64.4
Pp3c25_5550 Physcomitrium patens HOM05D004200 ORTHO05D004996 9.5e-42 174.1 130 76.9
Prupe.6G363000 Prunus persica HOM05D004200 ORTHO05D004996 9.5e-42 174.1 128 75.8
Nn7g37558 Nelumbo nucifera HOM05D004200 ORTHO05D004996 1.2e-41 173.7 128 74.2
Nitab4.5_0000080g0180 Nicotiana tabacum HOM05D004200 ORTHO05D004996 1.6e-41 173.3 131 74.0
Nn1g09712 Nelumbo nucifera HOM05D004200 ORTHO05D004996 2.1e-41 172.9 128 74.2
Aqoxy2G04143 Aquilegia oxysepala HOM05D004200 ORTHO05D004996 2.8e-41 172.6 128 73.4
Glyma.09G248800 Glycine max HOM05D004200 ORTHO05D004996 2.8e-41 172.6 128 75.8
Pp3c16_8650 Physcomitrium patens HOM05D004200 ORTHO05D004996 2.8e-41 172.6 130 76.2
Psat3g102400 Pisum sativum HOM05D004200 ORTHO05D004996 2.8e-41 172.6 135 71.1
RcHm_v2.0_Chr3g0447621 Rosa chinensis HOM05D004200 ORTHO05D004996 3.6e-41 172.2 128 74.2
MELO3C008563.2 Cucumis melo HOM05D004200 ORTHO05D004996 4.7e-41 171.8 128 75.0
CsaV3_2G010530 Cucumis sativus L. HOM05D004200 ORTHO05D004996 4.7e-41 171.8 128 75.0
ClCG11G009760 Citrullus lanatus HOM05D004200 ORTHO05D004996 8.1e-41 171.0 128 74.2
Glyma.18G243900 Glycine max HOM05D004200 ORTHO05D004996 8.1e-41 171.0 128 75.0
Cfa006248 Carpinus fangiana HOM05D004200 ORTHO05D004996 1.4e-40 170.2 128 74.2
Haze_04586 Corylus avellana HOM05D004200 ORTHO05D004996 1.4e-40 170.2 128 74.2
Dinv29084 Davidia involucrata HOM05D004200 ORTHO05D004996 1.4e-40 170.2 128 74.2
CSS0000339 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 1.8e-40 169.9 128 74.2
Solyc05g056280.2 Solanum lycopersicum HOM05D004200 ORTHO05D004996 1.8e-40 169.9 128 74.2
Sopen05g034670 Solanum pennellii HOM05D004200 ORTHO05D004996 1.8e-40 169.9 128 74.2
PGSC0003DMG402023454 Solanum tuberosum HOM05D004200 ORTHO05D004996 1.8e-40 169.9 128 74.2
CAN.G1921.6 Capsicum annuum HOM05D004200 ORTHO05D004996 2.3e-40 169.5 129 72.9
CiPaw.07G082000 Carya illinoinensis HOM05D004200 ORTHO05D004996 2.3e-40 169.5 128 74.2
Phvul.008G052700 Phaseolus vulgaris HOM05D004200 ORTHO05D004996 2.3e-40 169.5 128 74.2
Sed0018905 Sechium edule HOM05D004200 ORTHO05D004996 2.3e-40 169.5 128 74.2
FAN05G5080 Fragaria x ananassa HOM05D004200 ORTHO05D004996 3.1e-40 169.1 128 72.7
VMungo1383G0269 Vigna mungo HOM05D004200 ORTHO05D004996 3.1e-40 169.1 128 74.2
Eucgr.B01428 Eucalyptus grandis HOM05D004200 ORTHO05D004996 4.0e-40 168.7 128 74.2
MD04G1246800 Malus domestica HOM05D004200 ORTHO05D004996 4.0e-40 168.7 128 73.4
MD12G1263400 Malus domestica HOM05D004200 ORTHO05D004996 4.0e-40 168.7 128 74.2
Manes.12G003500 Manihot esculenta HOM05D004200 ORTHO05D004996 4.0e-40 168.7 128 73.4
GSVIVG01019063001 Vitis vinifera HOM05D004200 ORTHO05D004996 4.0e-40 168.7 128 72.7
CANSAT54G2186 Cannabis sativa HOM05D004200 ORTHO05D004996 5.2e-40 168.3 128 71.9
AUR62000293 Chenopodium quinoa HOM05D004200 ORTHO05D004996 5.2e-40 168.3 128 71.9
Mapoly0074s0043 Marchantia polymorpha HOM05D004200 ORTHO05D004996 5.2e-40 168.3 130 75.4
Medtr7g080320 Medicago truncatula HOM05D004200 ORTHO05D004996 5.2e-40 168.3 128 73.4
TPR.G33888 Trifolium pratense HOM05D004200 ORTHO05D004996 5.2e-40 168.3 128 73.4
arahy.Tifrunner.gnm1.ann1.26W00C Arachis hypogaea HOM05D004200 ORTHO05D004996 6.8e-40 167.9 131 73.3
arahy.Tifrunner.gnm1.ann1.28W6CD Arachis hypogaea HOM05D004200 ORTHO05D004996 6.8e-40 167.9 131 73.3
Ciclev10012249m.g Citrus clementina HOM05D004200 ORTHO05D004996 6.8e-40 167.9 128 74.2
Nitab4.5_0004652g0020 Nicotiana tabacum HOM05D004200 ORTHO05D004996 6.8e-40 167.9 128 74.2
vmacro10414 Vaccinium macrocarpon HOM05D004200 ORTHO05D004996 6.8e-40 167.9 132 71.2
CARHR195770 Cardamine hirsuta HOM05D004200 ORTHO05D004996 8.9e-40 167.5 157 63.1
Cpa.g.sc123.38 Carica papaya HOM05D004200 ORTHO05D004996 8.9e-40 167.5 128 72.7
Ca_08002_v3 Cicer arietinum L. HOM05D004200 ORTHO05D004996 8.9e-40 167.5 128 72.7
Manes.13G003600 Manihot esculenta HOM05D004200 ORTHO05D004996 8.9e-40 167.5 128 72.7
SalBow6G2550 Salvia bowleyana HOM05D004200 ORTHO05D004996 8.9e-40 167.5 129 72.9
Lj1C579T11 Lonicera japonica HOM05D004200 ORTHO05D004996 1.2e-39 167.2 128 72.7
PGR119G0338 Punica granatum HOM05D004200 ORTHO05D004996 1.2e-39 167.2 128 73.4
FvH4_6g00250 Fragaria vesca HOM05D004200 ORTHO05D004996 1.5e-39 166.8 128 71.9
FAN09G2946 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.5e-39 166.8 128 71.9
Rhsim09G0129000 Rhododendron simsii HOM05D004200 ORTHO05D004996 1.5e-39 166.8 132 70.5
AUR62006639 Chenopodium quinoa HOM05D004200 ORTHO05D004996 2.0e-39 166.4 128 71.1
Hma1.2p1_0220F.1_g092980 Hydrangea macrophylla HOM05D004200 ORTHO05D004996 2.0e-39 166.4 128 74.2
Nitab4.5_0000582g0030 Nicotiana tabacum HOM05D004200 ORTHO05D004996 2.0e-39 166.4 128 73.4
CSS0002176 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 2.6e-39 166.0 128 71.9
DCAR_030003 Daucus carota HOM05D004200 ORTHO05D004996 2.6e-39 166.0 131 72.5
Hund21914 Selenicereus undatus HOM05D004200 ORTHO05D004996 2.6e-39 166.0 128 72.7
FAN02G3263 Fragaria x ananassa HOM05D004200 ORTHO05D004996 3.4e-39 165.6 128 71.1
PSO832G1195 Papaver somniferum HOM05D004200 ORTHO05D004996 3.4e-39 165.6 128 71.1
Gohir.A02G105800 Gossypium hirsutum HOM05D004200 ORTHO05D004996 5.8e-39 164.9 128 71.9
Gohir.D03G078000 Gossypium hirsutum HOM05D004200 ORTHO05D004996 5.8e-39 164.9 128 71.9
Gorai.003G086100 Gossypium raimondii HOM05D004200 ORTHO05D004996 5.8e-39 164.9 128 71.9
TWI36G1378 Tripterygium wilfordii HOM05D004200 ORTHO05D004996 7.5e-39 164.5 128 71.9
Cc09_g03900 Coffea canephora HOM05D004200 ORTHO05D004996 9.9e-39 164.1 128 71.9
Lsat_1_v5_gn_0_14781 Lactuca sativa HOM05D004200 ORTHO05D004996 9.9e-39 164.1 132 68.9
HPP92_004648 Vanilla planifolia HOM05D004200 ORTHO05D004996 9.9e-39 164.1 128 70.3
MSTRG.8204 Avicennia marina HOM05D004200 ORTHO05D004996 1.3e-38 163.7 132 69.7
THA.LOC104820847 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 1.3e-38 163.7 158 62.7
CDE04G0807 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.7e-38 163.3 128 73.4
CDE07G0335 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.7e-38 163.3 128 73.4
Lalb_Chr03g0038051 Lupinus albus HOM05D004200 ORTHO05D004996 1.7e-38 163.3 128 73.4
THA.LOC104802907 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 1.7e-38 163.3 128 71.9
HanXRQChr15g0492211 Helianthus annuus HOM05D004200 ORTHO05D004996 2.2e-38 162.9 132 68.9
Lj1g0022981 Lotus japonicus HOM05D004200 ORTHO05D004996 2.2e-38 162.9 128 71.1
Actinidia03266 Actinidia chinensis HOM05D004200 ORTHO05D004996 3.7e-38 162.2 128 71.1
Oeu064498.2 Olea europaea HOM05D004200 ORTHO05D004996 3.7e-38 162.2 128 71.1
Hund07362 Selenicereus undatus HOM05D004200 ORTHO05D004996 3.7e-38 162.2 140 68.6
Sc16g0010470 Simmondsia chinensis HOM05D004200 ORTHO05D004996 8.3e-38 161.0 127 70.9
Dinv00535 Davidia involucrata HOM05D004200 ORTHO05D004996 1.1e-37 160.6 128 71.1
Duzib235G1318 Durio zibethinus HOM05D004200 ORTHO05D004996 1.4e-37 160.2 128 71.1
Oeu034779.1 Olea europaea HOM05D004200 ORTHO05D004996 1.4e-37 160.2 128 70.3
PSO210G5049 Papaver somniferum HOM05D004200 ORTHO05D004996 1.4e-37 160.2 129 70.5
SalBow1G8230 Salvia bowleyana HOM05D004200 ORTHO05D004996 1.4e-37 160.2 128 71.1
AL6G28510 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 1.9e-37 159.8 153 63.4
ECA232G1350 Erigeron canadensis HOM05D004200 ORTHO05D004996 1.9e-37 159.8 132 67.4
Thhalv10013707m.g Eutrema salsugineum HOM05D004200 ORTHO05D004996 3.2e-37 159.1 128 71.1
Thecc.05G189300 Theobroma cacao HOM05D004200 ORTHO05D004996 3.2e-37 159.1 128 71.1
AT3G03340 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 5.4e-37 158.3 128 70.3
Carub.0006s1566 Capsella rubella HOM05D004200 ORTHO05D004996 5.4e-37 158.3 128 71.1
Aa31LG5G13880 Aethionema arabicum HOM05D004200 ORTHO05D004996 7.1e-37 157.9 127 67.7
AL3G12970 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 9.2e-37 157.5 128 69.5
Carub.0003s0251 Capsella rubella HOM05D004200 ORTHO05D004996 1.2e-36 157.1 128 69.5
AagrBONN_evm.TU.Sc2ySwM_368.146 Anthoceros agrestis HOM05D004200 ORTHO05D004996 1.6e-36 156.8 132 70.5
unitig_26.g9576 Utricularia gibba HOM05D004200 ORTHO05D004996 1.6e-36 156.8 128 69.5
HanXRQChr04g0101101 Helianthus annuus HOM05D004200 ORTHO05D004996 2.1e-36 156.4 132 65.9
A10p21960 Brassica napus HOM05D004200 ORTHO05D004996 2.7e-36 156.0 128 69.5
BraA10t44254Z Brassica rapa HOM05D004200 ORTHO05D004996 2.7e-36 156.0 128 69.5
Sp6g26780 Schrenkiella parvula HOM05D004200 ORTHO05D004996 2.7e-36 156.0 128 70.3
BcaC03g13520 Brassica carinata HOM05D004200 ORTHO05D004996 3.5e-36 155.6 128 70.3
C02p09080 Brassica napus HOM05D004200 ORTHO05D004996 3.5e-36 155.6 128 70.3
BolC2t06818H Brassica oleracea HOM05D004200 ORTHO05D004996 3.5e-36 155.6 128 70.3
Migut.F02106 Erythranthe guttata HOM05D004200 ORTHO05D004996 3.5e-36 155.6 128 68.0
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 3.5e-36 155.6 129 68.2
Aa31LG11G12210 Aethionema arabicum HOM05D004200 ORTHO05D004996 1.0e-35 154.1 128 67.2
Migut.F01862 Erythranthe guttata HOM05D004200 ORTHO05D004996 1.0e-35 154.1 128 68.8
Peaxi162Scf00742g00213 Petunia axillaris HOM05D004200 ORTHO05D004996 1.3e-35 153.7 147 63.9
Potri.019G055000 Populus trichocarpa HOM05D004200 ORTHO05D004996 1.3e-35 153.7 128 68.0
Sabra19G0064000 Salix brachista HOM05D004200 ORTHO05D004996 1.3e-35 153.7 128 69.5
BcaB08g36770 Brassica carinata HOM05D004200 ORTHO05D004996 2.3e-35 152.9 128 68.8
A02p04200 Brassica napus HOM05D004200 ORTHO05D004996 3.0e-35 152.5 128 69.5
BcaC04g18792 Brassica carinata HOM05D004200 ORTHO05D004996 3.9e-35 152.1 128 68.8
C09p59710 Brassica napus HOM05D004200 ORTHO05D004996 3.9e-35 152.1 128 68.8
BolC9t58809H Brassica oleracea HOM05D004200 ORTHO05D004996 3.9e-35 152.1 128 68.8
SGA_v2.0_scaffold340G49307 Striga asiatica HOM05D004200 ORTHO05D004996 5.1e-35 151.8 146 64.4
Zm00001eb210930 Zea mays HOM05D004200 ORTHO05D004996 1.9e-34 149.8 127 70.1
AT5G17440 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 3.3e-34 149.1 128 68.8
Os03g0843500 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 4.3e-34 148.7 130 69.2
Zm00001eb064140 Zea mays HOM05D004200 ORTHO05D004996 5.6e-34 148.3 127 70.1
BolC3t13465H Brassica oleracea HOM05D004200 ORTHO05D004996 3.6e-33 145.6 127 67.7
Potri.013G084800 Populus trichocarpa HOM05D004200 ORTHO05D004996 1.1e-32 144.1 128 66.4
Sc09g0001390 Simmondsia chinensis HOM05D004200 ORTHO05D004996 1.8e-32 143.3 127 64.6
Os02g0605600 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 2.0e-31 139.8 127 62.2
BraA02t05383Z Brassica rapa HOM05D004200 ORTHO05D004996 2.6e-31 139.4 151 58.9
Peaxi162Scf00353g00751 Petunia axillaris HOM05D004200 ORTHO05D004996 2.2e-30 136.3 127 63.0
BraA03t10158Z Brassica rapa HOM05D004200 ORTHO05D004996 2.9e-30 136.0 137 62.8
SMO174G0194 Selaginella moellendorffii HOM05D004200 ORTHO05D004996 3.8e-30 135.6 129 64.3
Zm00001eb246650 Zea mays HOM05D004200 ORTHO05D004996 3.8e-30 135.6 130 60.8
CBR_g36466 Chara braunii HOM05D004200 ORTHO05D004996 8.4e-30 134.4 130 62.3
BcaB01g05204 Brassica carinata HOM05D004200 ORTHO05D004996 4.1e-29 132.1 114 67.5
Sabra13G0078600 Salix brachista HOM05D004200 ORTHO05D004996 9.2e-29 131.0 165 51.5
FAN14G5194 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-27 127.1 109 67.9
SEGI_12521 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 3.0e-27 125.9 69 98.6
C03p09760 Brassica napus HOM05D004200 ORTHO05D004996 8.7e-27 124.4 125 60.8
EL10Ac4g10002 Beta vulgaris HOM05D004200 ORTHO05D004996 2.5e-26 122.9 99 68.7
CARHR077380 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.6e-25 120.2 109 67.0
Ah.04g159100 Amaranthus hybridus HOM05D004200 ORTHO05D004996 5.2e-24 115.2 116 56.0
arahy.Tifrunner.gnm1.ann1.V65UZ0 Arachis hypogaea HOM05D004200 ORTHO05D004996 2.0e-23 113.2 88 70.5
arahy.Tifrunner.gnm1.ann1.D9AMXU Arachis hypogaea HOM05D004200 ORTHO05D004996 2.4e-16 89.7 68 70.6
QL01p048235 Quercus lobata HOM05D004200 ORTHO05D004996 9.0e-16 87.8 72 68.1
QL01p048256 Quercus lobata HOM05D004200 ORTHO05D004996 1.3e-14 84.0 62 74.2
Lalb_Chr01g0020581 Lupinus albus HOM05D004200 ORTHO05D004996 1.4e-13 80.5 56 76.8
Lalb_Chr01g0020591 Lupinus albus HOM05D004200 ORTHO05D004996 1.9e-13 80.1 70 64.3
SEGI_20593 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 1.3e-09 67.4 59 61.0
COL.COLO4_08422 Corchorus olitorius HOM05D004200 ORTHO05D004996 3.4e-07 59.3 36 75.0
arahy.Tifrunner.gnm1.ann1.R6HD8X Arachis hypogaea HOM05D004200 ORTHO05D004996 3.8e-06 55.8 42 69.0


User provided reference genes

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