Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20785 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.4e-89 330.5 163 100.0
SEGI_39097 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 5.4e-31 138.3 101 70.3
SEGI_19651 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.0e-31 137.9 112 64.3
SEGI_19004 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 5.2e-18 95.1 97 50.5
SEGI_02942 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.0e-17 93.2 96 51.0
SEGI_38653 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.0e-17 93.2 96 51.0
SEGI_35117 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 4.4e-17 92.0 96 50.0
SEGI_21641 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 5.8e-17 91.7 96 50.0
SEGI_33973 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 5.8e-17 91.7 96 50.0
SEGI_03182 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_03250 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_13805 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_15176 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_16998 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_18505 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_28893 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_30442 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_31503 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_33273 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_36063 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_38038 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 7.5e-17 91.3 96 50.0
SEGI_23817 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 9.8e-17 90.9 96 50.0
SEGI_09653 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.7e-16 90.1 96 49.0
SEGI_24652 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.7e-16 90.1 96 49.0
SEGI_14591 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.2e-16 89.7 96 49.0
SEGI_26611 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.2e-16 89.7 96 49.0
SEGI_40506 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.2e-16 89.7 96 49.0
SEGI_12525 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.9e-16 89.4 96 49.0
SEGI_41165 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.9e-16 89.4 96 49.0
SEGI_25006 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 6.4e-16 88.2 96 49.0
SEGI_39807 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 6.4e-16 88.2 96 49.0
SEGI_25306 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.4e-15 87.0 140 37.1
SEGI_04865 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.9e-15 86.7 104 44.2
SEGI_32750 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 3.2e-15 85.9 112 44.6
SEGI_14447 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 4.1e-15 85.5 96 47.9
SEGI_01205 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 8.6e-13 77.8 65 56.9
SEGI_29709 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 5.6e-12 75.1 80 50.0
SEGI_18864 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 3.6e-11 72.4 76 50.0
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 4.7e-11 72.0 73 49.3
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 4.7e-11 72.0 73 49.3
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 4.0e-10 68.9 122 35.2
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 5.2e-10 68.6 117 37.6
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 6.8e-10 68.2 90 44.4
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 6.8e-10 68.2 106 35.8
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 6.8e-10 68.2 65 53.8
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 8.9e-10 67.8 73 47.9
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 1.2e-09 67.4 97 37.1
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 1.5e-09 67.0 95 40.0
RcHm_v2.0_Chr4g0414501 Rosa chinensis HOM05D002899 ORTHO05D010192 1.5e-09 67.0 58 53.4
SEGI_05766 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.5e-09 67.0 96 36.5
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 2.0e-09 66.6 91 38.5
SEGI_36979 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.0e-09 66.6 62 56.5
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 2.6e-09 66.2 80 42.5
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 3.4e-09 65.9 53 58.5
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 3.4e-09 65.9 64 50.0
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 3.4e-09 65.9 102 39.2
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 3.4e-09 65.9 87 39.1
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 3.4e-09 65.9 74 44.6
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 4.4e-09 65.5 65 50.8
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 4.4e-09 65.5 104 36.5
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 4.4e-09 65.5 104 36.5
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 4.4e-09 65.5 104 36.5
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 4.4e-09 65.5 66 53.0
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 4.4e-09 65.5 55 54.5
DCAR_009032 Daucus carota HOM05D002899 ORTHO05D010792 5.8e-09 65.1 71 46.5
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 5.8e-09 65.1 77 46.8
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 7.5e-09 64.7 54 55.6
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 7.5e-09 64.7 54 55.6
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 7.5e-09 64.7 54 55.6
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 7.5e-09 64.7 56 53.6
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 7.5e-09 64.7 54 55.6
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 7.5e-09 64.7 54 55.6
Sc09g0008520 Simmondsia chinensis HOM05D002899 ORTHO05D003850 7.5e-09 64.7 54 55.6
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 7.5e-09 64.7 73 45.2
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 9.8e-09 64.3 95 41.1
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 9.8e-09 64.3 59 50.8
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 9.8e-09 64.3 59 50.8
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 9.8e-09 64.3 55 52.7
SEGI_23750 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 9.8e-09 64.3 60 51.7
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 9.8e-09 64.3 60 50.0
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 1.3e-08 63.9 55 52.7
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 1.3e-08 63.9 55 52.7
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 1.3e-08 63.9 101 37.6
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 1.3e-08 63.9 54 53.7
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.3e-08 63.9 77 45.5
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.3e-08 63.9 101 40.6
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 1.3e-08 63.9 54 53.7
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 1.7e-08 63.5 84 41.7
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 1.7e-08 63.5 92 38.0
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 1.7e-08 63.5 55 52.7
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 1.7e-08 63.5 54 55.6
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.7e-08 63.5 53 54.7
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 1.7e-08 63.5 50 60.0
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 2.2e-08 63.2 54 53.7
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 2.2e-08 63.2 54 51.9
FvH4_4g13670 Fragaria vesca HOM05D002899 ORTHO05D010192 2.2e-08 63.2 47 59.6
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 2.2e-08 63.2 74 44.6
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 2.2e-08 63.2 59 54.2
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 2.9e-08 62.8 53 52.8
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 2.9e-08 62.8 53 52.8
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 2.9e-08 62.8 67 47.8
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 2.9e-08 62.8 102 35.3
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 2.9e-08 62.8 68 44.1
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 2.9e-08 62.8 72 44.4
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 3.7e-08 62.4 54 50.0
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 3.7e-08 62.4 55 50.9
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 3.7e-08 62.4 104 37.5
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 3.7e-08 62.4 104 37.5
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 3.7e-08 62.4 54 51.9
Actinidia27037 Actinidia chinensis HOM05D002899 ORTHO05D003850 4.9e-08 62.0 54 51.9
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 4.9e-08 62.0 55 52.7
CDE02G4151 Ceratophyllum demersum HOM05D000614 ORTHO05D000463 4.9e-08 62.0 49 57.1
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 4.9e-08 62.0 95 40.0
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 4.9e-08 62.0 54 50.0
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 6.4e-08 61.6 67 44.8
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 6.4e-08 61.6 81 38.3
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 6.4e-08 61.6 118 35.6
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 6.4e-08 61.6 134 31.3
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 6.4e-08 61.6 103 36.9
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 6.4e-08 61.6 54 53.7
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 6.4e-08 61.6 101 37.6
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 8.3e-08 61.2 67 44.8
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 8.3e-08 61.2 54 51.9
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 8.3e-08 61.2 108 35.2
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 8.3e-08 61.2 101 37.6
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 8.3e-08 61.2 100 37.0
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.1e-07 60.8 95 35.8
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 1.1e-07 60.8 53 52.8
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 1.1e-07 60.8 85 38.8
SEGI_35472 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.1e-07 60.8 74 45.9
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 1.1e-07 60.8 104 37.5
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 1.4e-07 60.5 56 50.0
FAN12G4041 Fragaria x ananassa HOM05D002899 ORTHO05D010192 1.4e-07 60.5 46 58.7
AUR62031081 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.9e-07 60.1 101 36.6
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 1.9e-07 60.1 53 52.8
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 2.4e-07 59.7 88 39.8
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 2.4e-07 59.7 85 42.4
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 2.4e-07 59.7 58 51.7
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 3.2e-07 59.3 76 39.5
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 3.2e-07 59.3 53 50.9
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 3.2e-07 59.3 53 52.8
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 3.2e-07 59.3 54 50.0
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 4.1e-07 58.9 54 51.9
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 4.1e-07 58.9 77 37.7
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 4.1e-07 58.9 80 41.2
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 5.4e-07 58.5 80 38.8
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 5.4e-07 58.5 50 52.0
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 7.1e-07 58.2 66 45.5
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 7.1e-07 58.2 66 45.5
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 9.2e-07 57.8 114 33.3
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 9.2e-07 57.8 86 36.0
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 9.2e-07 57.8 68 41.2
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 9.2e-07 57.8 86 36.0
SEGI_24286 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 9.2e-07 57.8 92 34.8
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 1.2e-06 57.4 62 41.9
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.2e-06 57.4 53 49.1
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.2e-06 57.4 86 36.0
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 1.2e-06 57.4 108 31.5
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 1.2e-06 57.4 54 48.1
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.6e-06 57.0 66 43.9
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.6e-06 57.0 54 51.9
SGA_v2.0_scaffold229G43349 Striga asiatica HOM05D004574 ORTHO05D005612 1.6e-06 57.0 65 41.5
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 2.1e-06 56.6 86 37.2
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 2.1e-06 56.6 89 36.0
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 2.1e-06 56.6 89 36.0
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 2.1e-06 56.6 89 36.0
BolC5t30252H Brassica oleracea HOM05D002899 ORTHO05D010192 2.7e-06 56.2 87 37.9
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 2.7e-06 56.2 118 29.7
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 3.5e-06 55.8 99 36.4
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 3.5e-06 55.8 54 50.0
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 4.6e-06 55.5 53 47.2
SEGI_01850 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 4.6e-06 55.5 40 62.5
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 4.6e-06 55.5 74 41.9
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 6.0e-06 55.1 73 37.0
Sc18g0000060 Simmondsia chinensis HOM05D004574 ORTHO05D005612 6.0e-06 55.1 113 35.4
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 6.0e-06 55.1 80 38.8
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 7.8e-06 54.7 80 41.2
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 7.8e-06 54.7 56 48.2
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 7.8e-06 54.7 61 45.9
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 7.8e-06 54.7 107 36.4
SEGI_09740 Sequoiadendron giganteum HOM05D008257 ORTHO05D010546 7.8e-06 54.7 87 35.6


User provided reference genes

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