Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19875 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.5e-107 392.9 206 100.0
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 2.1e-24 116.7 68 86.8
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 3.4e-22 109.4 68 82.4
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.2e-21 106.7 79 75.9
SEGI_11540 Sequoiadendron giganteum HOM05D010422 ORTHO05D000062 2.2e-21 106.7 60 88.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 8.3e-21 104.8 67 82.1
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.4e-20 104.0 68 77.9
SEGI_16390 Sequoiadendron giganteum HOM05D010422 ORTHO05D000062 3.2e-20 102.8 60 85.0
SEGI_32221 Sequoiadendron giganteum HOM05D010422 ORTHO05D000062 3.2e-20 102.8 60 85.0
SEGI_11586 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 4.1e-20 102.4 68 80.9
SEGI_31309 Sequoiadendron giganteum HOM05D000107 ORTHO05D000062 4.6e-19 99.0 115 51.3
SEGI_18830 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 7.8e-19 98.2 68 79.4
SEGI_01215 Sequoiadendron giganteum HOM05D010422 ORTHO05D000062 2.3e-18 96.7 72 73.6
SEGI_15677 Sequoiadendron giganteum HOM05D010422 ORTHO05D000062 3.0e-18 96.3 72 70.8
SEGI_09441 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.0e-18 95.5 68 79.4
SEGI_22328 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 3.3e-17 92.8 68 77.9
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.6e-08 63.9 87 46.0
SEGI_04433 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 2.8e-08 63.2 37 89.2
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 4.7e-08 62.4 118 42.4
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.1e-07 61.2 89 50.6
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.8e-07 60.5 92 48.9
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.8e-07 60.5 93 47.3
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 4.0e-07 59.3 82 51.2
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 5.2e-07 58.9 93 47.3
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 6.8e-07 58.5 69 53.6
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 8.9e-07 58.2 71 52.1
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 8.9e-07 58.2 91 46.2
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 8.9e-07 58.2 98 45.9
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.2e-06 57.8 116 41.4
Solyc03g098280.4 Solanum lycopersicum HOM05D000234 ORTHO05D000335 1.2e-06 57.8 37 73.0
Sopen03g028990 Solanum pennellii HOM05D000234 ORTHO05D000335 1.2e-06 57.8 37 73.0
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.5e-06 57.4 91 47.3
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.5e-06 57.4 115 40.0
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.5e-06 57.4 101 45.5
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.5e-06 57.4 80 48.8
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.5e-06 57.4 93 46.2
Aqoxy3G00014 Aquilegia oxysepala HOM05D000234 ORTHO05D000335 2.0e-06 57.0 37 73.0
Haze_25652 Corylus avellana HOM05D000234 ORTHO05D000335 2.0e-06 57.0 51 62.7
Haze_25655 Corylus avellana HOM05D000234 ORTHO05D000335 2.0e-06 57.0 51 62.7
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 2.0e-06 57.0 93 48.4
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.0e-06 57.0 97 46.4
unitig_0.g1397 Utricularia gibba HOM05D000234 ORTHO05D000335 2.0e-06 57.0 37 78.4
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.6e-06 56.6 90 50.0
ATR0083G035 Amborella trichopoda HOM05D000234 ORTHO05D000335 2.6e-06 56.6 37 75.7
MSTRG.4332 Avicennia marina HOM05D000234 ORTHO05D000335 2.6e-06 56.6 37 75.7
Ca_18569_v3 Cicer arietinum L. HOM05D000234 ORTHO05D000335 2.6e-06 56.6 37 75.7
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.6e-06 56.6 92 46.7
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 2.6e-06 56.6 89 44.9
Gohir.A09G172000 Gossypium hirsutum HOM05D000234 ORTHO05D000335 2.6e-06 56.6 37 75.7
Gohir.D09G167700 Gossypium hirsutum HOM05D000234 ORTHO05D000335 2.6e-06 56.6 37 75.7
Gorai.006G189400 Gossypium raimondii HOM05D000234 ORTHO05D000335 2.6e-06 56.6 37 75.7
SEGI_31562 Sequoiadendron giganteum HOM05D010422 ORTHO05D000062 2.6e-06 56.6 43 74.4
GSVIVG01015464001 Vitis vinifera HOM05D000234 ORTHO05D000335 2.6e-06 56.6 37 78.4
Cfa003316 Carpinus fangiana HOM05D000234 ORTHO05D000335 3.4e-06 56.2 37 78.4
Oeu013935.1 Olea europaea HOM05D000234 ORTHO05D000335 3.4e-06 56.2 37 75.7
Oeu038483.1 Olea europaea HOM05D000234 ORTHO05D000335 3.4e-06 56.2 62 54.8
QL02p086639 Quercus lobata HOM05D000234 ORTHO05D000335 3.4e-06 56.2 37 78.4
QL93p0331_0124 Quercus lobata HOM05D002404 ORTHO05D029955 3.4e-06 56.2 37 78.4
SalBow5G2607 Salvia bowleyana HOM05D000234 ORTHO05D000335 3.4e-06 56.2 37 75.7
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.4e-06 56.2 93 46.2
Zm00001eb284880 Zea mays HOM05D000234 ORTHO05D000335 3.4e-06 56.2 41 63.4
Actinidia18880 Actinidia chinensis HOM05D000243 ORTHO05D000278 4.4e-06 55.8 57 54.4
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 4.4e-06 55.8 116 39.7
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 4.4e-06 55.8 90 45.6
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 4.4e-06 55.8 90 45.6
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 4.4e-06 55.8 90 45.6
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 4.4e-06 55.8 115 40.0
CiPaw.15G151300 Carya illinoinensis HOM05D000234 ORTHO05D000335 4.4e-06 55.8 37 70.3
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.4e-06 55.8 92 46.7
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 4.4e-06 55.8 92 46.7
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 4.4e-06 55.8 86 47.7
Os02g0672200 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 4.4e-06 55.8 37 73.0
Sc10g0008890 Simmondsia chinensis HOM05D000234 ORTHO05D000335 4.4e-06 55.8 37 75.7
Actinidia02684 Actinidia chinensis HOM05D000234 ORTHO05D000335 5.8e-06 55.5 37 75.7
MSTRG.11544 Avicennia marina HOM05D000234 ORTHO05D000335 5.8e-06 55.5 37 75.7
CAN.G65.78 Capsicum annuum HOM05D000234 ORTHO05D000335 5.8e-06 55.5 37 73.0
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.8e-06 55.5 92 45.7
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 5.8e-06 55.5 92 44.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.8e-06 55.5 93 46.2
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.8e-06 55.5 93 46.2
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.8e-06 55.5 93 46.2
Manes.14G127700 Manihot esculenta HOM05D000234 ORTHO05D000335 5.8e-06 55.5 37 78.4
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 5.8e-06 55.5 123 42.3
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 5.8e-06 55.5 116 40.5
SEGI_36295 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 5.8e-06 55.5 37 75.7
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 5.8e-06 55.5 91 45.1
TAR371G0283 Trochodendron aralioides HOM05D000234 ORTHO05D000335 5.8e-06 55.5 37 75.7
TAR371G0574 Trochodendron aralioides HOM05D000234 ORTHO05D000335 5.8e-06 55.5 37 75.7
GSVIVG01014252001 Vitis vinifera HOM05D000234 ORTHO05D000335 5.8e-06 55.5 37 75.7
Atru.chr9.1582 Acer truncatum HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
arahy.Tifrunner.gnm1.ann1.AWX2XN Arachis hypogaea HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
CAN.G637.6 Capsicum annuum HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Cpa.g.sc75.90 Carica papaya HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 75.7
ClCG04G012520 Citrullus lanatus HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
COL.COLO4_16306 Corchorus olitorius HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
MELO3C001957.2 Cucumis melo HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 7.5e-06 55.1 93 41.9
Dinv13017 Davidia involucrata HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Dinv28083 Davidia involucrata HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Dinv35462 Davidia involucrata HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Duzib068G1316 Durio zibethinus HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Duzib084G0439 Durio zibethinus HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Duzib205G1342 Durio zibethinus HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Eucgr.K02304 Eucalyptus grandis HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Lj9C414G4 Lonicera japonica HOM05D000234 ORTHO05D000335 7.5e-06 55.1 47 66.0
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 7.5e-06 55.1 93 47.3
Peaxi162Scf00171g00430 Petunia axillaris HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Psat1g122920 Pisum sativum HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
Thecc.03G070300 Theobroma cacao HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
TAR622G0540 Trochodendron aralioides HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 75.7
GSVIVG01029383001 Vitis vinifera HOM05D000234 ORTHO05D000335 7.5e-06 55.1 37 73.0
EL10Ac8g19500 Beta vulgaris HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 70.3
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 9.9e-06 54.7 90 44.4
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 9.9e-06 54.7 90 44.4
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 9.9e-06 54.7 90 45.6
Ciclev10018625m.g Citrus clementina HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
Migut.O00245 Erythranthe guttata HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
Glyma.16G217300 Glycine max HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
Lsat_1_v5_gn_2_19760 Lactuca sativa HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
Lj5C166G4 Lonicera japonica HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
Nitab4.5_0002049g0030 Nicotiana tabacum HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 67.6
Nitab4.5_0002442g0050 Nicotiana tabacum HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 67.6
Oeu058730.1 Olea europaea HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
Os04g0566500 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 70.3
Phvul.004G142900 Phaseolus vulgaris HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
Hund22327 Selenicereus undatus HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 70.3
SEGI_41153 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 9.9e-06 54.7 36 80.6
SGA_v2.0_scaffold114G31894 Striga asiatica HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
SGA_v2.0_scaffold764G53571 Striga asiatica HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
SGA_v2.0_scaffold90G27770 Striga asiatica HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
HPP92_003633 Vanilla planifolia HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 70.3
VMungo0464G0811 Vigna mungo HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 73.0
Zm00001eb073810 Zea mays HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 70.3
Zm00001eb159510 Zea mays HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 70.3
Zm00001eb382280 Zea mays HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 70.3
Zm00001eb428910 Zea mays HOM05D000234 ORTHO05D000335 9.9e-06 54.7 37 70.3


User provided reference genes

Program Settings