Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.8e-83 312.4 144 100.0
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 3.6e-39 165.2 125 57.6
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 1.1e-38 163.7 125 54.4
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 4.4e-37 158.3 126 56.3
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 3.7e-36 155.2 126 54.8
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 4.9e-36 154.8 126 56.3
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 4.9e-36 154.8 129 54.3
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 4.1e-35 151.8 126 52.4
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 7.1e-35 151.0 129 53.5
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 9.2e-35 150.6 126 54.8
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 1.2e-34 150.2 126 55.6
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 2.1e-34 149.4 126 54.8
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 2.7e-34 149.1 126 54.8
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 2.7e-34 149.1 126 50.8
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 2.7e-34 149.1 137 52.6
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 4.6e-34 148.3 126 55.6
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.6e-34 148.3 135 50.4
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 7.8e-34 147.5 125 53.6
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 1.0e-33 147.1 126 57.1
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 1.0e-33 147.1 126 54.8
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 1.3e-33 146.7 126 54.0
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 1.3e-33 146.7 124 55.6
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 1.7e-33 146.4 126 56.3
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 1.7e-33 146.4 126 54.0
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 3.0e-33 145.6 126 56.3
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 3.0e-33 145.6 126 56.3
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 3.0e-33 145.6 126 54.0
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 3.9e-33 145.2 126 55.6
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 3.9e-33 145.2 126 55.6
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 5.1e-33 144.8 126 54.8
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 5.1e-33 144.8 126 53.2
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 6.6e-33 144.4 126 53.2
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 6.6e-33 144.4 125 53.6
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 8.6e-33 144.1 126 52.4
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 8.6e-33 144.1 126 52.4
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.1e-32 143.7 126 54.8
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 1.1e-32 143.7 125 56.8
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.1e-32 143.7 126 54.0
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 1.1e-32 143.7 126 52.4
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.5e-32 143.3 126 52.4
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.5e-32 143.3 126 53.2
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.5e-32 143.3 126 52.4
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.9e-32 142.9 125 53.6
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.9e-32 142.9 125 53.6
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 1.9e-32 142.9 126 55.6
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 1.9e-32 142.9 126 53.2
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 1.9e-32 142.9 129 52.7
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 2.5e-32 142.5 126 52.4
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 2.5e-32 142.5 126 53.2
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 2.5e-32 142.5 126 53.2
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 2.5e-32 142.5 126 52.4
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 2.5e-32 142.5 126 53.2
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 2.5e-32 142.5 121 54.5
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 2.5e-32 142.5 126 53.2
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 2.5e-32 142.5 125 53.6
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 3.3e-32 142.1 126 50.8
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 3.3e-32 142.1 126 51.6
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 3.3e-32 142.1 126 52.4
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 3.3e-32 142.1 145 49.0
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 3.3e-32 142.1 138 50.7
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 3.3e-32 142.1 126 55.6
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.3e-32 141.7 126 54.8
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 4.3e-32 141.7 126 50.8
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 4.3e-32 141.7 126 53.2
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 5.6e-32 141.4 126 54.0
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 7.3e-32 141.0 126 51.6
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 9.5e-32 140.6 126 55.6
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 9.5e-32 140.6 126 52.4
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 9.5e-32 140.6 126 50.8
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 1.2e-31 140.2 125 52.8
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 1.2e-31 140.2 129 49.6
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 1.2e-31 140.2 124 53.2
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 2.1e-31 139.4 129 50.4
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 2.1e-31 139.4 124 54.0
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 2.1e-31 139.4 121 53.7
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 2.8e-31 139.0 126 54.0
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 2.8e-31 139.0 126 52.4
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 2.8e-31 139.0 138 50.0
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 3.6e-31 138.7 126 54.0
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 3.6e-31 138.7 126 54.0
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 4.7e-31 138.3 137 51.1
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 4.7e-31 138.3 137 51.1
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 4.7e-31 138.3 126 54.0
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 4.7e-31 138.3 126 54.0
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 6.2e-31 137.9 121 53.7
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 6.2e-31 137.9 126 51.6
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 6.2e-31 137.9 126 51.6
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 6.2e-31 137.9 126 51.6
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 6.2e-31 137.9 126 50.8
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 6.2e-31 137.9 127 49.6
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 8.1e-31 137.5 126 53.2
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 1.1e-30 137.1 126 54.0
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 1.1e-30 137.1 126 53.2
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 1.1e-30 137.1 126 54.0
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 1.1e-30 137.1 126 50.0
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 1.1e-30 137.1 126 50.8
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 1.1e-30 137.1 126 50.0
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 1.1e-30 137.1 142 47.2
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 1.4e-30 136.7 124 51.6
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 1.4e-30 136.7 125 50.4
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 1.8e-30 136.3 126 50.8
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 1.8e-30 136.3 126 53.2
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 2.4e-30 136.0 124 51.6
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 2.4e-30 136.0 126 51.6
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 4.0e-30 135.2 126 52.4
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 4.0e-30 135.2 126 54.0
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 4.0e-30 135.2 121 52.1
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 4.0e-30 135.2 121 52.1
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 5.2e-30 134.8 126 52.4
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 5.2e-30 134.8 127 49.6
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 8.9e-30 134.0 125 50.4
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 1.5e-29 133.3 126 53.2
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 1.5e-29 133.3 126 53.2
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.5e-29 133.3 154 45.5
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 2.0e-29 132.9 123 51.2
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.4e-29 131.7 126 50.8
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 4.4e-29 131.7 126 52.4
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 7.6e-29 131.0 121 51.2
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 7.6e-29 131.0 132 48.5
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 1.3e-28 130.2 124 50.8
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.3e-28 130.2 126 50.0
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.7e-28 129.8 125 48.8
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 2.9e-28 129.0 118 50.8
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 3.8e-28 128.6 154 46.1
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 2.4e-27 125.9 128 48.4
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 1.6e-26 123.2 133 48.1
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 4.6e-26 121.7 126 48.4
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 1.0e-25 120.6 124 49.2
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 3.9e-25 118.6 133 45.9
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 8.7e-25 117.5 160 41.2
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 8.7e-25 117.5 90 54.4
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 2.8e-23 112.5 112 44.6
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.3e-20 103.6 123 43.1
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.7e-17 93.2 46 91.3
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 4.3e-16 88.6 128 42.2
vmacro12470 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 9.6e-16 87.4 95 47.4
Cpa.g.c39095 Carica papaya HOM05D003906 ORTHO05D004776 2.1e-15 86.3 82 50.0
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 1.1e-14 84.0 86 48.8
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 2.4e-14 82.8 100 37.0
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 4.0e-14 82.0 125 33.6
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.5e-13 78.6 132 32.6
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 7.6e-13 77.8 124 37.9
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-11 73.9 122 32.8
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.2e-11 72.0 130 36.2
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.2e-11 72.0 130 36.2
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.2e-11 72.0 130 36.2
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 4.6e-10 68.6 126 31.0
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 1.8e-09 66.6 122 34.4
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 2.3e-09 66.2 133 33.8
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 1.9e-08 63.2 100 36.0
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 3.3e-08 62.4 108 37.0
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 9.6e-08 60.8 133 32.3
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 1.3e-07 60.5 40 62.5
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 3.7e-07 58.9 39 59.0
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 1.1e-06 57.4 136 32.4
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.4e-06 57.0 39 61.5
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 2.4e-06 56.2 47 57.4
BcaC01g04724 Brassica carinata HOM05D003906 ORTHO05D004776 9.0e-06 54.3 99 32.3


User provided reference genes

Program Settings