Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18211 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 1.6e-186 656.0 351 100.0
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 4.3e-94 349.0 249 69.9
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 5.6e-94 348.6 244 77.0
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 9.6e-94 347.8 244 77.0
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 1.1e-92 344.4 244 70.1
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.8e-92 343.6 244 70.1
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 9.0e-92 341.3 249 68.3
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 3.4e-91 339.3 249 68.7
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 5.8e-91 338.6 249 72.7
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 5.8e-91 338.6 249 72.7
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 5.8e-91 338.6 252 67.5
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 7.6e-91 338.2 244 76.6
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 7.6e-91 338.2 249 75.1
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 7.6e-91 338.2 249 74.7
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 1.3e-90 337.4 244 74.2
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 1.3e-90 337.4 249 67.9
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 1.7e-90 337.0 249 67.5
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 2.2e-90 336.7 251 75.3
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 2.2e-90 336.7 249 75.1
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 2.2e-90 336.7 244 68.9
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 2.9e-90 336.3 249 74.7
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 2.9e-90 336.3 249 74.3
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.8e-90 335.9 249 74.7
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 4.9e-90 335.5 244 67.6
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 4.9e-90 335.5 249 74.3
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 4.9e-90 335.5 263 64.6
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 6.4e-90 335.1 244 73.8
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 8.4e-90 334.7 249 74.7
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 8.4e-90 334.7 249 74.7
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 1.1e-89 334.3 244 68.9
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 1.4e-89 334.0 249 66.7
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 1.4e-89 334.0 244 71.7
Lj2A20T45 Lonicera japonica HOM05D003507 ORTHO05D004324 1.9e-89 333.6 238 69.7
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 2.4e-89 333.2 249 73.1
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 2.4e-89 333.2 244 75.4
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 2.4e-89 333.2 249 67.5
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 3.2e-89 332.8 249 65.9
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 3.2e-89 332.8 249 66.7
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 4.2e-89 332.4 244 67.2
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 4.2e-89 332.4 244 68.4
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 4.2e-89 332.4 244 67.6
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 7.1e-89 331.6 244 68.9
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 7.1e-89 331.6 244 68.9
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 7.1e-89 331.6 244 68.4
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 9.3e-89 331.3 249 66.7
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 9.3e-89 331.3 244 68.4
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 9.3e-89 331.3 244 68.9
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 1.2e-88 330.9 244 67.6
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 1.6e-88 330.5 238 76.5
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 1.6e-88 330.5 244 68.0
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.6e-88 330.5 244 68.4
Os04g0224900 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D004324 1.6e-88 330.5 249 73.5
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.6e-88 330.5 244 68.4
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 2.1e-88 330.1 249 67.1
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 2.1e-88 330.1 252 65.5
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 4.6e-88 328.9 244 68.4
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 6.0e-88 328.6 252 73.4
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 6.0e-88 328.6 244 68.0
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 6.0e-88 328.6 244 68.0
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 6.0e-88 328.6 244 67.6
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 7.9e-88 328.2 247 68.4
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 1.0e-87 327.8 244 68.0
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 1.0e-87 327.8 244 67.6
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.0e-87 327.8 244 67.6
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.0e-87 327.8 244 67.6
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 1.8e-87 327.0 244 67.2
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 1.8e-87 327.0 244 73.0
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.3e-87 326.6 244 67.6
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 2.3e-87 326.6 244 66.8
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 3.0e-87 326.2 244 66.8
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 3.0e-87 326.2 244 73.4
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 3.9e-87 325.9 244 67.2
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 3.9e-87 325.9 244 67.2
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 6.7e-87 325.1 245 74.3
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 6.7e-87 325.1 244 75.4
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 8.7e-87 324.7 244 66.8
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 8.7e-87 324.7 244 66.8
BcaNung06832 Brassica carinata HOM05D003507 ORTHO05D004324 1.1e-86 324.3 244 66.4
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 1.1e-86 324.3 244 73.8
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 1.1e-86 324.3 244 70.1
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 1.5e-86 323.9 244 66.4
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 1.9e-86 323.6 249 65.5
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 2.5e-86 323.2 244 66.4
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.5e-86 323.2 249 71.9
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 3.3e-86 322.8 244 66.4
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 3.3e-86 322.8 244 66.4
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 3.3e-86 322.8 244 73.0
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 4.3e-86 322.4 244 66.4
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 4.3e-86 322.4 244 74.2
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 4.3e-86 322.4 244 66.0
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 5.6e-86 322.0 251 64.9
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 5.6e-86 322.0 245 65.7
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 5.6e-86 322.0 238 67.2
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 7.4e-86 321.6 245 65.7
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 7.4e-86 321.6 244 66.4
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 7.4e-86 321.6 249 70.7
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 9.6e-86 321.2 244 66.0
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 9.6e-86 321.2 244 66.0
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 9.6e-86 321.2 244 66.4
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 9.6e-86 321.2 244 73.8
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 1.3e-85 320.9 244 66.0
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 1.3e-85 320.9 244 66.0
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 1.3e-85 320.9 244 66.0
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 1.6e-85 320.5 244 65.2
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 1.6e-85 320.5 244 65.6
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 1.6e-85 320.5 253 65.2
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 2.1e-85 320.1 244 65.6
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 2.8e-85 319.7 244 65.6
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 4.8e-85 318.9 244 72.1
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 4.8e-85 318.9 248 66.9
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 6.2e-85 318.5 238 65.5
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 6.2e-85 318.5 244 71.7
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 8.1e-85 318.2 239 67.8
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 8.1e-85 318.2 239 74.1
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 1.4e-84 317.4 244 66.8
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.8e-84 317.0 237 67.9
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 2.4e-84 316.6 244 63.5
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 2.4e-84 316.6 244 63.5
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 9.0e-84 314.7 244 66.4
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 9.0e-84 314.7 249 71.5
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 2.0e-83 313.5 244 63.5
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 4.5e-83 312.4 247 63.6
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 5.8e-83 312.0 244 66.8
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 7.6e-83 311.6 250 71.2
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 7.6e-83 311.6 244 63.5
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 1.3e-82 310.8 238 66.4
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 1.7e-82 310.5 244 73.8
VMungo0251G1768 Vigna mungo HOM05D003507 ORTHO05D004324 1.7e-82 310.5 239 72.0
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 1.1e-81 307.8 249 66.7
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 2.5e-81 306.6 244 65.2
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 7.9e-80 301.6 232 63.8
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 1.3e-79 300.8 239 63.2
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 8.7e-79 298.1 237 63.3
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 1.1e-78 297.7 244 70.5
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 1.5e-78 297.4 244 61.1
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.5e-78 297.4 240 61.7
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 4.3e-78 295.8 237 62.9
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 7.4e-78 295.0 271 57.6
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 7.4e-78 295.0 237 62.9
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 2.5e-73 280.0 240 58.8
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 3.2e-73 279.6 234 67.9
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 9.3e-73 278.1 363 44.9
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 2.1e-72 276.9 249 58.6
Oeu000789.2 Olea europaea HOM05D003507 ORTHO05D004324 2.7e-72 276.6 263 55.5
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 2.3e-71 273.5 242 57.4
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.9e-70 270.4 233 59.2
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.3e-69 267.7 259 56.8
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 8.2e-69 265.0 239 56.5
Nitab4.5_0027540g0010 Nicotiana tabacum HOM05D003507 ORTHO05D004324 3.7e-61 239.6 184 62.5
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 1.4e-57 227.6 150 73.3
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 7.2e-57 225.3 155 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 4.4e-54 216.1 146 71.2
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 1.4e-52 211.1 180 61.7
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.7e-48 196.8 245 48.6
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 3.3e-46 189.9 237 57.0
CSS0011029 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.8e-45 186.0 156 60.3
CSS0013740 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.8e-45 186.0 158 58.9
CSS0000572 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.6e-43 181.0 156 58.3
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 4.5e-43 179.5 258 40.7
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 1.9e-41 174.1 260 39.6
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 1.3e-37 161.4 230 40.9
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 3.1e-36 156.8 248 39.1
CSS0034710 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 5.9e-35 152.5 156 51.3
Cpa.g.sc2869.1 Carica papaya HOM05D003507 ORTHO05D004324 3.1e-28 130.2 86 70.9
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 8.6e-26 122.1 186 38.7
BcaNung06282 Brassica carinata HOM05D003507 ORTHO05D004324 2.8e-16 90.5 63 71.4
Nn2g13805 Nelumbo nucifera HOM05D003507 ORTHO05D004324 1.0e-10 72.0 53 69.8
HPP92_008470 Vanilla planifolia HOM05D003507 ORTHO05D429279 5.6e-09 66.2 65 56.9
SEGI_28023 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 2.1e-08 64.3 52 59.6


User provided reference genes

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