Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 0.0e+00 2308.5 1170 100.0
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.6e-172 611.3 1025 43.1
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.2e-171 607.4 1000 42.8
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.8e-171 606.7 1011 42.2
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 7.5e-167 592.4 1025 40.9
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.8e-158 563.9 1023 40.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.2e-150 537.7 1052 39.4
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 2.9e-142 510.8 993 40.2
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 7.0e-141 506.1 979 41.1
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 9.2e-141 505.8 1083 38.0
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 6.2e-137 493.0 1007 38.4
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.1e-133 480.3 972 38.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.4e-133 479.9 961 39.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.2e-133 479.2 962 39.5
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.0e-132 478.0 1010 38.1
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.7e-132 477.6 959 39.4
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.0e-131 475.7 953 40.0
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.3e-131 475.3 962 39.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.7e-131 474.9 956 38.9
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 3.9e-131 473.8 962 37.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 6.6e-131 473.0 943 38.7
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.6e-130 469.9 965 39.9
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 7.3e-130 469.5 840 40.2
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 6.8e-128 463.0 955 37.8
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 8.9e-128 462.6 999 37.5
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 8.9e-128 462.6 964 37.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-127 461.8 996 37.2
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.7e-126 457.2 989 37.5
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.4e-126 456.4 997 37.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-125 455.7 997 37.1
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.7e-124 451.1 918 38.1
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.5e-124 450.7 989 38.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.6e-124 450.3 958 37.9
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.0e-123 449.1 1022 36.7
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.7e-123 448.4 987 38.1
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.3e-123 448.0 1019 37.4
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.0e-123 447.6 926 37.8
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 3.3e-122 444.1 947 37.8
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.6e-122 443.4 1022 35.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 7.3e-122 443.0 934 36.9
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-121 442.2 1020 35.2
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.1e-121 441.4 952 38.3
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.1e-120 439.1 949 37.8
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-119 434.9 1020 35.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 4.4e-119 433.7 1007 37.4
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 4.4e-119 433.7 940 38.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 7.6e-119 433.0 920 38.2
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 7.6e-119 433.0 907 37.9
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 7.6e-119 433.0 925 38.3
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.9e-118 431.0 970 36.1
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.9e-118 430.3 910 37.6
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.9e-117 428.3 940 37.9
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.9e-117 428.3 948 36.3
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.9e-117 428.3 942 38.0
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.2e-117 427.6 948 37.2
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 9.2e-117 426.0 953 36.4
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 9.2e-117 426.0 960 34.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.7e-116 424.5 1049 34.7
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 3.9e-115 420.6 978 36.9
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 6.6e-115 419.9 940 37.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.1e-114 419.1 915 37.4
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 9.6e-114 416.0 802 40.0
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 9.6e-114 416.0 997 35.4
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.2e-113 415.6 962 35.8
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 2.1e-113 414.8 942 36.8
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.8e-113 414.5 905 35.8
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.1e-112 412.5 996 35.6
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.4e-112 411.4 941 36.7
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 3.1e-112 411.0 905 36.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 4.0e-112 410.6 998 35.6
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 6.9e-112 409.8 1008 36.2
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 9.0e-112 409.5 999 35.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.0e-112 409.5 969 35.7
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.2e-111 409.1 1029 35.9
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.7e-110 405.2 1037 34.1
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.9e-110 404.4 978 35.5
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 6.4e-110 403.3 998 35.4
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.9e-109 401.7 936 36.3
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 4.2e-109 400.6 984 36.1
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.1e-108 398.3 1007 34.3
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 2.7e-108 397.9 848 36.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-106 392.5 961 36.1
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.1e-106 392.5 953 35.7
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.9e-106 391.7 956 36.1
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.5e-106 391.3 1048 35.3
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 5.6e-106 390.2 911 36.0
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 5.6e-106 390.2 961 35.2
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 7.3e-106 389.8 957 35.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-105 389.0 877 38.8
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.3e-105 389.0 1007 34.6
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.6e-105 388.7 752 40.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.6e-105 388.7 907 35.8
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 5.3e-104 383.6 995 34.1
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.4e-103 380.9 761 39.0
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.4e-103 380.9 902 35.8
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 6.4e-102 376.7 963 34.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 3.2e-101 374.4 757 39.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.2e-101 374.0 967 34.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.2e-101 374.0 964 35.3
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.0e-100 370.2 904 34.3
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.8e-99 368.6 1028 33.5
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.3e-99 368.2 1023 34.2
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.1e-98 365.9 988 33.2
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.6e-97 362.1 801 35.5
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.6e-97 362.1 925 33.7
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 2.0e-95 355.1 1007 34.2
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-94 352.4 742 39.4
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.7e-94 352.1 898 33.7
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.8e-94 350.9 1015 32.7
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 4.9e-94 350.5 1050 31.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.4e-93 348.2 906 33.8
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.4e-93 348.2 902 33.9
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.6e-92 345.5 913 34.3
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 6.0e-92 343.6 909 34.8
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.9e-92 343.2 978 32.6
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.0e-91 341.3 1017 32.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 6.7e-91 340.1 1038 30.3
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 3.3e-90 337.8 682 38.1
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 3.3e-90 337.8 1025 32.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 9.6e-90 336.3 970 31.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.8e-89 334.7 1005 32.4
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.1e-88 332.8 875 33.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 6.9e-88 330.1 921 34.2
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.4e-87 327.8 701 37.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 4.5e-87 327.4 981 31.9
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 4.5e-87 327.4 981 31.9
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 6.5e-86 323.6 883 33.9
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 6.5e-86 323.6 882 33.1
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 6.5e-86 323.6 883 33.9
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 8.4e-86 323.2 913 32.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 8.4e-86 323.2 867 33.7
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 3.2e-85 321.2 905 31.5
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 3.2e-85 321.2 878 33.3
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.6e-84 318.9 878 32.9
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.6e-84 317.4 831 33.9
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.3e-83 315.1 942 31.7
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.0e-83 314.7 919 32.9
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.5e-82 312.4 798 33.1
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.4e-82 310.1 962 31.7
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.3e-81 309.3 987 31.3
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.6e-81 308.9 609 36.9
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 9.7e-74 283.1 817 32.1
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.1e-66 259.6 761 33.6
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 3.3e-66 258.1 978 30.8
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 9.7e-66 256.5 483 41.0
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.8e-64 252.3 566 37.8
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 5.9e-63 247.3 941 30.3
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.7e-62 245.7 515 38.6
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.5e-61 240.7 676 33.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-59 235.0 769 32.5
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.3e-57 227.3 567 33.3
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.1e-52 212.2 336 43.8
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-48 199.1 382 38.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.2e-46 192.2 413 36.3
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 5.5e-45 187.6 291 41.9
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-44 185.3 413 37.5
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 4.1e-40 171.4 428 32.9
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 6.1e-36 157.5 541 27.5
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 4.4e-34 151.4 226 43.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.8e-33 148.7 479 31.9
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.3e-27 129.0 172 45.3
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.4e-24 119.8 134 50.7
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 6.0e-23 114.4 236 36.4
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 6.0e-23 114.4 115 48.7
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.3e-22 113.2 305 34.8
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 5.0e-22 111.3 148 44.6
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.3e-19 102.4 161 37.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 9.8e-18 97.1 129 43.4
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 8.3e-17 94.0 102 50.0
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.7e-15 89.0 534 24.7
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 2.3e-11 75.9 118 39.8
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 6.8e-11 74.3 90 45.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-10 73.2 116 39.7
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 3.4e-10 72.0 82 43.9
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 9.2e-08 63.9 94 41.5
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-07 63.5 72 44.4
HPP92_002216 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.7e-06 59.7 101 38.6
AT3G19130 Arabidopsis thaliana HOM05D000561 ORTHO05D000514 3.0e-06 58.9 106 37.7
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.6e-06 57.4 40 62.5


User provided reference genes

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