Gene: AT3G19130
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G19130
- Transcript Identifier AT3G19130.1
- Gene Type Coding gene
- Location Chr3 : 6611398-6613823 : negative
Gene Family Information
- ID HOM05D000561
- #Genes/#Species 984/100
- Phylogenetic origin
- ID ORTHO05D000514
- #Genes/#Species 826/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G19130.1
- symbol RBP47B
- Alias ATRBP47B,RNA-binding protein 47B
- uniprot Q0WW84
Descriptions
- Description RNA-binding protein 47B
- Computational description RNA-binding protein 47B (RBP47B); FUNCTIONS IN: RNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47A (TAIR:AT1G49600.1); Has 37628 Blast hits to 21966 proteins in 866 species: Archae - 14; Bacteria - 2376; Metazoa - 18486; Fungi - 4600; Plants - 6856; Viruses - 8; Other Eukaryotes - 5288 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0034063 | IEP | Gene Ontology | stress granule assembly | 1 |
| GO:0034605 | ISS | Gene Ontology | cellular response to heat |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 2 3 4 |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
| GO:0008143 | ISS | Gene Ontology | poly(A) binding | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISS, ISM | Gene Ontology | nucleus | |
| GO:0005829 | IDA IBA | Gene Ontology | cytosol | 1 2 |
| GO:0010494 | IDA ISS | Gene Ontology | cytoplasmic stress granule | 7 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.8.4 | RNA processing.mRNA sequestration.mRNA-binding regulatory factor (RBP45/47) |