Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 0.0e+00 1289.6 633 100.0
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.0e-45 189.1 538 30.1
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.5e-25 120.6 235 34.0
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.3e-24 119.0 168 41.1
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 1.7e-24 118.6 228 34.2
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 3.8e-24 117.5 216 35.6
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 5.0e-24 117.1 217 33.6
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 5.0e-24 117.1 217 33.6
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 8.5e-24 116.3 255 32.2
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.1e-23 115.9 215 34.0
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 5.5e-23 113.6 270 32.2
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 2.1e-22 111.7 157 38.9
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 4.6e-22 110.5 217 30.0
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 6.1e-22 110.2 198 32.8
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.8e-21 108.6 198 32.8
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.3e-21 108.2 170 35.3
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.0e-21 107.8 149 36.2
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.9e-21 107.5 166 36.1
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.9e-21 107.5 171 36.3
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.1e-21 107.1 217 30.0
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 5.1e-21 107.1 217 30.0
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 6.7e-21 106.7 263 30.4
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 1.5e-20 105.5 129 43.4
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 2.0e-20 105.1 222 30.6
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.0e-20 105.1 192 32.3
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 5.7e-20 103.6 168 36.9
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 7.4e-20 103.2 205 29.3
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.7e-20 102.8 191 31.4
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.7e-20 102.8 191 30.9
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 9.7e-20 102.8 267 31.1
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.7e-19 102.1 260 28.8
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.7e-19 102.1 216 31.5
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 2.2e-19 101.7 223 31.4
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 2.2e-19 101.7 166 33.7
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 2.8e-19 101.3 219 31.1
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 2.8e-19 101.3 182 34.1
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 3.7e-19 100.9 250 30.4
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 4.8e-19 100.5 216 30.1
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 4.8e-19 100.5 223 30.5
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 4.8e-19 100.5 264 29.9
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 6.3e-19 100.1 174 33.9
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 8.2e-19 99.8 130 38.5
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 8.2e-19 99.8 183 34.4
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.4e-18 99.0 230 30.4
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.4e-18 99.0 216 31.0
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 1.8e-18 98.6 197 31.0
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 2.4e-18 98.2 219 29.2
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 3.1e-18 97.8 180 31.7
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 3.1e-18 97.8 180 31.7
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 4.1e-18 97.4 168 34.5
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.1e-18 97.4 166 36.1
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 5.3e-18 97.1 167 34.7
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 5.3e-18 97.1 232 30.6
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.3e-18 97.1 255 30.6
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 5.3e-18 97.1 218 32.1
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 5.3e-18 97.1 196 33.2
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 6.9e-18 96.7 218 28.4
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.5e-17 95.5 324 28.1
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.5e-17 95.5 253 29.6
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 2.0e-17 95.1 211 29.4
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 2.0e-17 95.1 220 29.1
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.0e-17 95.1 219 30.6
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 5.9e-17 93.6 218 30.3
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 5.9e-17 93.6 167 33.5
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 5.9e-17 93.6 211 30.3
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 5.9e-17 93.6 198 28.8
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 7.7e-17 93.2 220 27.3
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 1.0e-16 92.8 162 33.3
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 1.0e-16 92.8 252 25.0
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.3e-16 92.4 243 25.9
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.7e-16 92.0 145 35.9
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 1.7e-16 92.0 418 25.6
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.7e-16 92.0 176 30.1
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 2.9e-16 91.3 266 25.2
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 5.0e-16 90.5 167 32.3
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 5.0e-16 90.5 209 30.6
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 6.5e-16 90.1 139 34.5
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 6.5e-16 90.1 216 27.3
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 6.5e-16 90.1 212 29.7
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.5e-16 90.1 217 30.4
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 8.5e-16 89.7 258 25.6
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 1.1e-15 89.4 252 25.4
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 1.1e-15 89.4 131 33.6
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 1.1e-15 89.4 162 34.0
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.1e-15 89.4 194 28.4
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.4e-15 89.0 223 28.3
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 2.5e-15 88.2 181 31.5
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 3.2e-15 87.8 141 32.6
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 3.2e-15 87.8 169 32.0
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.2e-15 87.8 188 31.4
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 3.2e-15 87.8 200 28.0
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 4.2e-15 87.4 171 29.8
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 7.2e-15 86.7 165 32.7
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 7.2e-15 86.7 219 28.8
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 7.2e-15 86.7 168 32.1
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 9.4e-15 86.3 170 31.2
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.2e-14 85.9 224 29.5
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.2e-14 85.9 223 30.0
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.2e-14 85.9 168 28.6
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.6e-14 85.5 191 28.8
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 1.6e-14 85.5 214 29.4
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 2.7e-14 84.7 185 29.7
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 3.6e-14 84.3 214 29.9
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 7.9e-14 83.2 139 37.4
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.4e-13 82.4 296 24.7
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 1.8e-13 82.0 219 29.7
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 1.8e-13 82.0 129 34.1
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 2.3e-13 81.6 131 35.1
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 3.0e-13 81.3 158 31.0
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 3.9e-13 80.9 233 25.8
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.9e-13 80.9 158 31.0
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 5.2e-13 80.5 247 26.7
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 5.2e-13 80.5 163 32.5
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 1.1e-12 79.3 163 31.9
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 2.0e-12 78.6 131 33.6
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.0e-12 78.6 158 31.6
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.6e-12 78.2 161 31.7
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 7.4e-12 76.6 129 34.9
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 7.4e-12 76.6 260 26.2
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 8.2e-11 73.2 103 35.9
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 4.1e-10 70.9 127 29.9
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 5.9e-09 67.0 130 30.0
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 5.9e-09 67.0 107 32.7
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 7.7e-09 66.6 263 27.0
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 1.0e-08 66.2 101 33.7
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 1.3e-08 65.9 166 25.9
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.7e-08 65.5 107 31.8
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.8e-08 64.3 210 26.7
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 8.5e-08 63.2 150 29.3
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 8.5e-08 63.2 130 28.5
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 1.5e-07 62.4 150 28.7
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 1.5e-07 62.4 150 28.7
CARHR075500 Cardamine hirsuta HOM05D003353 ORTHO05D003751 1.5e-07 62.4 99 32.3
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 1.5e-07 62.4 333 21.9
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.9e-07 62.0 130 29.2
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 2.5e-07 61.6 150 27.3
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 3.2e-07 61.2 104 34.6
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 3.2e-07 61.2 104 34.6
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 3.2e-07 61.2 130 28.5
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 4.2e-07 60.8 127 26.0
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 4.2e-07 60.8 114 31.6
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 4.2e-07 60.8 114 31.6
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 4.2e-07 60.8 114 31.6
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 5.5e-07 60.5 130 26.2
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 5.5e-07 60.5 130 26.2
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 7.2e-07 60.1 110 31.8
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 1.2e-06 59.3 129 27.9
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 1.6e-06 58.9 102 34.3
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 1.6e-06 58.9 133 24.8
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 1.6e-06 58.9 102 34.3
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 1.6e-06 58.9 102 34.3
CBR_g24400 Chara braunii HOM05D003353 ORTHO05D003751 1.6e-06 58.9 53 43.4
vmacro05816 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 1.6e-06 58.9 116 31.0
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 2.1e-06 58.5 143 30.8
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.1e-06 58.5 130 26.9
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 2.7e-06 58.2 46 47.8
Nn4g22008 Nelumbo nucifera HOM05D003353 ORTHO05D003751 3.6e-06 57.8 46 47.8
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 3.6e-06 57.8 46 47.8
Rhsim10G0137200 Rhododendron simsii HOM05D002415 ORTHO05D002522 3.6e-06 57.8 50 44.0
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 4.7e-06 57.4 46 47.8
Dinv35053 Davidia involucrata HOM05D003353 ORTHO05D003751 4.7e-06 57.4 46 47.8
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 4.7e-06 57.4 117 29.9
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 4.7e-06 57.4 46 45.7
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 6.1e-06 57.0 46 47.8
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 8.0e-06 56.6 128 29.7
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 8.0e-06 56.6 50 46.0
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 8.0e-06 56.6 50 46.0
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 8.0e-06 56.6 49 44.9
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
Potri.017G072460 Populus trichocarpa HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 8.0e-06 56.6 46 45.7
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 8.0e-06 56.6 87 35.6


User provided reference genes

Program Settings