Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 1.1e-66 256.5 132 100.0
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 5.8e-52 207.6 126 81.7
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 2.2e-51 205.7 127 78.7
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.2e-51 205.7 126 80.2
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 2.2e-51 205.7 126 80.2
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 2.2e-51 205.7 126 80.2
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.9e-51 205.3 126 81.0
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.9e-51 205.3 126 81.0
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 4.2e-50 201.4 125 77.6
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 7.1e-50 200.7 130 77.7
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 9.3e-50 200.3 126 77.0
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.2e-49 199.9 126 78.6
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.7e-49 198.7 126 76.2
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.7e-49 198.7 126 76.2
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 2.7e-49 198.7 126 77.0
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.5e-49 198.4 124 77.4
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 6.0e-49 197.6 121 78.5
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 6.0e-49 197.6 126 74.6
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 6.0e-49 197.6 129 74.4
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.0e-48 196.8 129 75.2
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.3e-48 196.4 129 74.4
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 1.8e-48 196.1 116 81.0
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.3e-48 195.7 129 75.2
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 3.0e-48 195.3 126 75.4
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 5.1e-48 194.5 131 74.8
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.1e-47 193.4 130 74.6
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.1e-47 193.4 129 72.9
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.9e-47 192.6 129 72.1
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.5e-47 192.2 126 73.0
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 9.6e-47 190.3 126 73.0
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 1.3e-46 189.9 126 73.0
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.6e-46 189.5 125 72.8
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.1e-46 189.1 126 72.2
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 3.7e-46 188.3 118 76.3
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 3.7e-46 188.3 124 73.4
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 4.8e-46 188.0 127 71.7
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 8.2e-46 187.2 126 72.2
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 8.2e-46 187.2 144 66.0
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.1e-45 186.8 124 71.0
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 1.4e-45 186.4 129 75.2
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 1.4e-45 186.4 126 71.4
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 2.4e-45 185.7 126 71.4
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 6.9e-45 184.1 124 72.6
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 6.9e-45 184.1 129 70.5
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 9.0e-45 183.7 123 69.9
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 9.0e-45 183.7 130 71.5
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 9.0e-45 183.7 121 74.4
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 9.0e-45 183.7 121 72.7
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.2e-44 183.3 124 70.2
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 2.0e-44 182.6 124 70.2
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.0e-44 182.6 127 70.9
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 2.6e-44 182.2 130 69.2
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 3.4e-44 181.8 130 70.8
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 3.4e-44 181.8 123 69.1
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 5.8e-44 181.0 136 66.2
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 1.0e-43 180.3 124 69.4
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.0e-43 180.3 124 70.2
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 1.0e-43 180.3 124 70.2
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.0e-43 180.3 124 70.2
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.0e-43 180.3 111 79.3
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.0e-43 180.3 126 69.0
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.3e-43 179.9 124 69.4
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 1.3e-43 179.9 124 71.0
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 1.3e-43 179.9 140 65.7
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.7e-43 179.5 122 73.0
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.7e-43 179.5 123 70.7
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 1.7e-43 179.5 123 68.3
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 1.7e-43 179.5 122 72.1
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 2.2e-43 179.1 127 70.1
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 2.9e-43 178.7 127 68.5
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 2.9e-43 178.7 127 69.3
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 3.8e-43 178.3 124 69.4
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 3.8e-43 178.3 124 70.2
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 6.5e-43 177.6 129 65.9
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 6.5e-43 177.6 124 70.2
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 6.5e-43 177.6 123 67.5
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 8.4e-43 177.2 122 71.3
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 8.4e-43 177.2 122 71.3
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 1.1e-42 176.8 124 67.7
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.1e-42 176.8 123 69.9
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.1e-42 176.8 126 68.3
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.5e-42 175.6 128 69.5
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 3.2e-42 175.3 122 70.5
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 4.2e-42 174.9 124 66.9
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 4.2e-42 174.9 167 57.5
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.5e-42 174.5 126 69.8
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 5.5e-42 174.5 107 76.6
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 7.1e-42 174.1 124 68.5
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 9.3e-42 173.7 123 70.7
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 9.3e-42 173.7 116 70.7
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.6e-41 172.9 121 67.8
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 3.5e-41 171.8 122 66.4
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 4.6e-41 171.4 109 73.4
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 7.9e-41 170.6 124 65.3
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.8e-40 169.5 124 64.5
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.8e-40 169.5 131 65.6
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.8e-40 169.5 115 72.2
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 3.0e-40 168.7 126 63.5
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 5.7e-39 164.5 127 64.6
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 5.7e-39 164.5 99 75.8
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 7.4e-39 164.1 126 63.5
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.2e-38 162.5 159 56.0
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 6.3e-38 161.0 127 61.4
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 6.3e-38 161.0 97 75.3
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.1e-37 160.2 130 63.1
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.8e-37 159.5 110 71.8
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 3.1e-37 158.7 170 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.1e-37 158.3 131 61.1
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 5.3e-37 157.9 123 61.0
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 5.3e-37 157.9 126 59.5
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 9.0e-37 157.1 115 66.1
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 9.0e-37 157.1 116 62.9
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 9.0e-37 157.1 122 62.3
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 9.0e-37 157.1 110 68.2
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.2e-36 156.8 111 65.8
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 1.2e-36 156.8 132 56.8
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.5e-36 156.4 110 63.6
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.5e-36 156.4 105 65.7
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.5e-36 156.4 110 63.6
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 2.0e-36 156.0 118 62.7
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 2.0e-36 156.0 132 56.8
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 2.0e-36 156.0 132 56.8
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 2.0e-36 156.0 132 56.8
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 2.6e-36 155.6 100 73.0
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.6e-36 155.6 95 76.8
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.4e-36 155.2 128 60.9
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.5e-36 154.8 89 80.9
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 5.9e-36 154.5 126 65.9
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 7.6e-36 154.1 132 56.1
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 3.8e-35 151.8 138 58.0
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 3.2e-34 148.7 104 68.3
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 3.9e-32 141.7 100 67.0
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 3.9e-32 141.7 87 75.9
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 5.1e-32 141.4 163 47.2
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.5e-31 139.8 82 84.1
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 3.3e-31 138.7 108 64.8
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 2.8e-30 135.6 89 71.9
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.8e-30 135.6 124 57.3
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 6.3e-30 134.4 96 67.7
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.2e-28 130.2 124 55.6
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 2.0e-28 129.4 81 75.3
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.7e-27 126.3 84 73.8
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.7e-27 126.3 91 64.8
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 8.5e-27 124.0 78 74.4
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 5.1e-24 114.8 95 61.1
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 9.7e-23 110.5 78 66.7
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 9.7e-23 110.5 69 72.5
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 2.2e-22 109.4 105 50.5
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.2e-22 109.4 63 76.2
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 5.3e-21 104.8 58 84.5
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 6.9e-21 104.4 86 53.5
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.9e-18 96.3 103 45.6
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 2.5e-18 95.9 124 46.0
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.6e-17 92.0 70 61.4
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 1.8e-16 89.7 97 45.4
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.6e-12 75.9 38 100.0
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 5.9e-12 74.7 115 37.4
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 7.2e-10 67.8 93 36.6
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 3.6e-09 65.5 47 66.0
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.0e-08 62.0 48 56.2


User provided reference genes

Program Settings