Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 4.1e-190 667.9 343 100.0
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.3e-103 380.6 342 58.5
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.8e-103 379.0 343 59.2
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 9.4e-102 374.4 332 60.2
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 2.1e-101 373.2 333 59.8
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 8.8e-100 367.9 334 57.5
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 4.8e-98 362.1 345 55.7
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 2.0e-96 356.7 340 56.5
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 5.0e-95 352.1 333 57.4
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 5.0e-95 352.1 343 54.5
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 1.9e-94 350.1 325 56.9
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.5e-94 349.7 313 58.5
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 4.2e-94 349.0 343 53.9
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 1.2e-93 347.4 293 58.4
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 1.2e-93 347.4 348 55.7
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.6e-93 347.1 339 55.2
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.1e-93 346.7 340 54.4
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 2.7e-93 346.3 342 56.4
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 2.7e-93 346.3 341 54.3
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 6.1e-93 345.1 313 58.1
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 6.1e-93 345.1 318 57.9
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 1.0e-92 344.4 341 53.4
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.8e-92 343.6 328 55.8
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.8e-92 343.6 340 56.2
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.3e-92 343.2 300 57.3
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.3e-92 343.2 300 57.3
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 2.3e-92 343.2 378 50.8
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 3.0e-92 342.8 320 55.9
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 5.1e-92 342.0 340 53.8
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 5.1e-92 342.0 348 55.7
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 8.8e-92 341.3 285 59.6
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 2.0e-91 340.1 322 55.0
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 4.4e-91 339.0 312 57.4
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 4.4e-91 339.0 343 54.2
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 7.4e-91 338.2 344 54.1
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 7.4e-91 338.2 340 53.2
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.3e-90 337.4 294 58.2
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 1.3e-90 337.4 344 54.4
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.3e-90 337.4 307 57.3
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 1.7e-90 337.0 328 55.2
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 2.2e-90 336.7 321 54.5
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.8e-90 336.3 312 57.1
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 3.7e-90 335.9 322 54.3
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 3.7e-90 335.9 344 52.0
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 4.8e-90 335.5 285 57.9
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 4.8e-90 335.5 347 54.5
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 6.3e-90 335.1 330 56.7
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 8.2e-90 334.7 322 55.3
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 8.2e-90 334.7 299 55.5
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 1.4e-89 334.0 344 51.7
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 1.8e-89 333.6 340 52.9
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 1.8e-89 333.6 354 53.7
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.8e-89 333.6 283 58.3
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 2.4e-89 333.2 294 56.5
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 4.1e-89 332.4 334 54.2
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 5.3e-89 332.0 292 55.8
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.2e-88 330.9 299 56.2
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.2e-88 330.9 340 54.4
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 2.0e-88 330.1 286 57.3
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 2.0e-88 330.1 326 54.9
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 2.6e-88 329.7 308 56.2
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 2.6e-88 329.7 328 53.4
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 7.7e-88 328.2 293 56.0
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 7.7e-88 328.2 341 50.1
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.0e-87 327.8 322 53.7
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.0e-87 327.8 338 53.6
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 1.7e-87 327.0 286 59.1
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 2.9e-87 326.2 339 52.2
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 2.9e-87 326.2 281 56.6
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 2.9e-87 326.2 309 55.3
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.8e-87 325.9 294 56.8
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 3.8e-87 325.9 285 57.2
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 3.8e-87 325.9 299 55.9
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 3.8e-87 325.9 323 53.6
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 5.0e-87 325.5 336 51.8
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 5.0e-87 325.5 286 58.7
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.9e-86 323.6 295 54.2
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 1.9e-86 323.6 335 55.2
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 3.2e-86 322.8 319 53.6
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 4.2e-86 322.4 341 52.2
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.2e-85 320.9 332 52.4
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 4.7e-85 318.9 293 53.9
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 4.7e-85 318.9 328 52.1
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 4.7e-85 318.9 338 54.1
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 8.0e-85 318.2 340 53.2
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 1.0e-84 317.8 299 54.8
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 1.0e-84 317.8 279 55.6
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 5.7e-83 312.0 295 54.9
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.7e-82 310.5 305 55.7
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 2.8e-82 309.7 309 54.4
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 4.1e-81 305.8 290 56.2
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 2.9e-79 299.7 300 53.3
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 1.9e-78 297.0 284 53.5
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.4e-76 290.8 315 50.5
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.4e-76 290.8 359 44.6
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 4.0e-76 289.3 323 50.5
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 6.8e-76 288.5 297 50.5
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.1e-73 281.2 321 49.8
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 3.5e-72 276.2 331 48.3
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.6e-69 267.3 298 48.7
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 3.6e-69 266.2 269 51.7
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 2.3e-68 263.5 334 46.4
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 6.8e-68 261.9 291 48.5
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 1.5e-62 244.2 330 44.5
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 8.0e-61 238.4 222 54.1
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.3e-55 221.1 221 52.0
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 4.7e-53 212.6 244 50.0
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.4e-52 211.1 242 50.0
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.9e-50 202.6 239 49.0
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.1e-46 191.4 243 45.3
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.5e-46 191.0 143 64.3
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 2.6e-43 180.3 215 50.2
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.3e-39 167.9 209 50.2
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.8e-29 133.7 103 62.1
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.1e-25 121.7 348 28.7
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.5e-24 116.7 299 30.8
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 6.0e-24 115.9 333 29.1
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.7e-23 114.4 99 53.5
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 1.9e-22 110.9 90 58.9
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 1.9e-22 110.9 90 58.9
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.9e-22 110.9 78 61.5
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 1.7e-15 87.8 97 50.5
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 6.6e-15 85.9 62 62.9
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 1.5e-14 84.7 96 47.9
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.3e-13 81.6 50 76.0
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 3.4e-11 73.6 39 82.1
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 2.7e-08 63.9 87 43.7
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.0e-07 62.0 87 48.3
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 2.3e-07 60.8 87 47.1
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 2.3e-07 60.8 87 47.1
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 3.9e-07 60.1 94 41.5
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.9e-07 60.1 64 45.3


User provided reference genes

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