Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 5.8e-242 840.5 429 100.0
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 2.6e-141 506.1 322 78.9
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 1.7e-140 503.4 322 78.3
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 2.2e-140 503.1 322 78.6
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 2.8e-140 502.7 424 62.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 4.1e-139 498.8 322 77.3
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.6e-138 496.9 322 76.1
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.7e-137 493.4 319 76.5
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 1.7e-137 493.4 322 76.1
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 2.3e-137 493.0 318 77.0
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 2.9e-137 492.7 322 76.1
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 3.9e-137 492.3 323 76.2
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 3.9e-137 492.3 322 76.4
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 3.9e-137 492.3 322 76.1
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 3.9e-137 492.3 320 76.2
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 6.6e-137 491.5 322 75.8
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 6.6e-137 491.5 319 76.2
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 8.6e-137 491.1 322 76.7
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 1.5e-136 490.3 322 75.8
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 1.5e-136 490.3 322 75.5
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.5e-136 490.3 322 76.4
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 1.5e-136 490.3 322 76.4
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 1.5e-136 490.3 322 76.4
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 1.5e-136 490.3 322 75.8
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.9e-136 490.0 322 75.8
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.9e-136 490.0 322 75.8
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 2.5e-136 489.6 322 75.2
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 2.5e-136 489.6 322 75.8
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 3.3e-136 489.2 322 75.5
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 4.3e-136 488.8 322 75.5
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 4.3e-136 488.8 322 75.5
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 4.3e-136 488.8 322 75.2
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 5.6e-136 488.4 322 75.8
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 5.6e-136 488.4 322 75.8
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 7.3e-136 488.0 322 75.8
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 7.3e-136 488.0 322 75.5
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 7.3e-136 488.0 322 74.8
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 9.5e-136 487.6 322 75.2
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 2.1e-135 486.5 322 75.8
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 3.6e-135 485.7 322 75.2
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 3.6e-135 485.7 322 75.5
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 4.7e-135 485.3 322 76.1
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 4.7e-135 485.3 322 75.2
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 4.7e-135 485.3 322 74.8
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 4.7e-135 485.3 322 75.8
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 6.1e-135 485.0 322 75.2
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 6.1e-135 485.0 322 75.2
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 8.0e-135 484.6 322 74.5
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 8.0e-135 484.6 322 74.5
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 8.0e-135 484.6 322 74.5
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 8.0e-135 484.6 322 74.5
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 8.0e-135 484.6 322 74.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 8.0e-135 484.6 318 75.8
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 8.0e-135 484.6 322 74.8
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.0e-134 484.2 322 74.2
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.0e-134 484.2 322 74.8
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 1.0e-134 484.2 322 74.8
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 1.0e-134 484.2 322 74.8
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 1.0e-134 484.2 322 74.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 1.8e-134 483.4 322 74.8
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 1.8e-134 483.4 322 74.8
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 1.8e-134 483.4 322 74.8
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 1.8e-134 483.4 322 73.6
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-134 483.4 322 75.2
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-134 483.0 322 75.2
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 3.1e-134 482.6 322 74.8
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 3.1e-134 482.6 322 74.2
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 3.1e-134 482.6 322 74.2
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 4.0e-134 482.3 322 74.8
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 4.0e-134 482.3 322 74.2
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 5.2e-134 481.9 322 73.0
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 5.2e-134 481.9 322 74.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 5.2e-134 481.9 322 74.5
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 6.8e-134 481.5 322 74.5
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 6.8e-134 481.5 322 74.5
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 6.8e-134 481.5 322 74.8
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 6.8e-134 481.5 322 74.8
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 6.8e-134 481.5 322 73.9
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 8.9e-134 481.1 323 73.7
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 8.9e-134 481.1 322 73.9
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 1.5e-133 480.3 322 73.9
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 2.0e-133 479.9 322 74.5
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 2.6e-133 479.6 322 74.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 2.6e-133 479.6 322 73.9
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 5.8e-133 478.4 322 74.2
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 5.8e-133 478.4 323 74.6
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 5.8e-133 478.4 322 73.6
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 9.8e-133 477.6 322 73.6
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 9.8e-133 477.6 322 73.9
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 9.8e-133 477.6 322 74.5
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 1.7e-132 476.9 319 74.3
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 2.2e-132 476.5 333 71.8
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 2.9e-132 476.1 323 74.3
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 8.3e-132 474.6 322 73.3
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 1.9e-131 473.4 322 72.7
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 2.4e-131 473.0 356 68.5
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 9.2e-131 471.1 322 72.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 2.7e-130 469.5 322 73.0
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-130 469.2 322 72.7
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 1.3e-129 467.2 318 73.3
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.9e-129 465.7 363 66.9
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.0e-129 465.3 322 71.7
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 5.0e-129 465.3 322 71.4
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 6.6e-129 464.9 314 73.9
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-128 464.2 363 66.7
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 1.5e-128 463.8 322 71.1
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 4.3e-128 462.2 322 71.4
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 7.3e-128 461.5 340 70.0
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 7.3e-128 461.5 319 71.5
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 2.1e-127 459.9 322 72.7
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 4.7e-127 458.8 324 70.7
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 5.8e-125 451.8 318 70.1
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 2.9e-124 449.5 339 67.6
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 5.1e-121 438.7 316 70.9
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 6.6e-121 438.3 317 68.1
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 3.1e-118 429.5 323 69.0
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.1e-118 429.5 322 68.0
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 6.8e-118 428.3 325 65.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.9e-118 427.9 413 55.0
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 5.8e-117 425.2 322 67.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 1.3e-116 424.1 320 68.4
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 3.7e-116 422.5 325 66.5
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 4.9e-116 422.2 321 67.6
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 4.9e-116 422.2 319 68.0
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 2.1e-114 416.8 323 67.2
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.7e-108 397.1 323 62.2
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 3.3e-104 382.9 323 65.0
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 8.1e-103 378.3 265 69.1
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 1.4e-102 377.5 323 63.5
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.4e-99 366.7 327 59.3
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-96 356.7 331 55.3
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-88 329.7 334 54.8
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 9.6e-88 328.2 325 52.9
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 4.5e-85 319.3 335 51.0
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-84 317.8 342 50.3
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.2e-83 313.2 204 75.0
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-81 307.4 277 57.4
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 6.1e-66 255.8 327 45.0
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-55 221.5 321 42.1
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-53 214.9 175 62.3
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-53 214.9 175 62.3
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-53 214.9 175 62.3
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 5.0e-52 209.5 315 40.3
SEGI_07852 Sequoiadendron giganteum HOM05D000845 ORTHO05D004734 1.8e-49 201.1 97 100.0
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.7e-48 196.1 171 59.6
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.1e-46 191.8 192 51.6
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.4e-46 190.7 334 37.7
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 4.0e-41 173.3 120 73.3
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 8.3e-31 139.0 178 47.2
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 9.1e-30 135.6 251 35.5
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.2e-26 125.2 86 72.1
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.0e-20 105.5 83 60.2
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 4.7e-18 96.7 145 40.0
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 4.0e-17 93.6 71 67.6
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 9.2e-14 82.4 54 74.1
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.0e-13 81.3 72 52.8
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.5e-11 75.1 124 38.7
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 3.3e-11 73.9 46 71.7
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.4e-09 68.6 55 67.3
SEGI_16619 Sequoiadendron giganteum HOM05D002128 ORTHO05D002497 9.8e-08 62.4 86 45.3
SEGI_02282 Sequoiadendron giganteum HOM05D001289 ORTHO05D002298 8.3e-07 59.3 82 42.7


User provided reference genes

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