Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 0.0e+00 1147.9 626 100.0
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 6.6e-178 628.2 632 59.5
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.8e-175 620.2 670 57.0
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 7.0e-172 608.2 664 56.3
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.5e-169 600.5 672 56.4
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.5e-169 599.7 666 57.8
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 7.3e-169 598.2 667 55.6
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 2.9e-165 586.3 657 56.5
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.4e-164 583.2 663 57.2
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 4.1e-164 582.4 673 54.2
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 9.2e-164 581.3 660 55.5
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 5.0e-162 575.5 661 53.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 5.0e-162 575.5 667 56.1
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.5e-161 573.9 664 56.9
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.5e-161 573.9 662 56.0
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.9e-161 573.5 652 54.1
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 4.3e-161 572.4 662 54.5
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 5.6e-161 572.0 667 56.2
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.3e-161 571.6 659 54.3
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 7.3e-161 571.6 663 54.0
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 9.5e-161 571.2 666 54.1
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 2.1e-160 570.1 666 56.0
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.1e-160 570.1 661 53.7
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 2.1e-160 570.1 664 54.1
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 6.2e-160 568.5 658 56.5
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 8.1e-160 568.2 661 56.7
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.4e-159 567.4 662 56.5
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.8e-159 567.0 666 55.0
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.3e-159 566.6 662 54.2
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.2e-159 565.5 662 53.2
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 5.2e-159 565.5 669 53.7
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.2e-158 564.3 661 54.5
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.5e-158 563.9 662 53.3
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.6e-158 563.1 663 53.8
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 3.4e-158 562.8 663 56.0
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.4e-158 562.8 662 53.0
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.4e-158 562.4 671 53.4
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 5.8e-158 562.0 666 55.4
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 9.8e-158 561.2 665 55.0
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.8e-158 561.2 650 53.7
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-157 560.8 662 52.9
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.9e-157 559.7 666 55.0
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 8.3e-157 558.1 666 54.7
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.4e-156 557.4 641 55.1
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 2.4e-156 556.6 661 53.9
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.4e-156 556.6 662 52.7
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 5.4e-156 555.4 658 53.6
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 7.1e-156 555.1 660 55.5
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.2e-156 554.7 645 54.3
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.2e-155 554.3 641 55.1
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.2e-155 554.3 653 53.1
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.2e-155 554.3 663 53.2
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.2e-155 554.3 663 53.2
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.1e-155 553.5 653 55.1
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.6e-155 552.4 656 53.2
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 7.8e-155 551.6 659 53.0
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.3e-154 550.8 639 56.5
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.3e-154 550.8 663 52.9
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.3e-154 550.8 663 52.2
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.6e-154 548.1 662 52.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 8.6e-154 548.1 649 55.8
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 8.6e-154 548.1 648 55.4
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.1e-153 547.7 650 53.1
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.9e-153 547.0 652 52.9
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.3e-153 546.2 671 52.9
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.3e-153 545.8 645 53.3
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.2e-152 544.3 655 54.0
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.1e-152 543.5 658 52.6
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 3.6e-152 542.7 661 54.0
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.7e-152 542.3 658 52.6
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 3.1e-151 539.7 652 54.1
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 6.8e-151 538.5 655 52.4
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 6.8e-151 538.5 661 52.0
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.8e-151 538.5 671 52.6
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.9e-151 538.1 658 52.0
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 4.4e-150 535.8 636 53.0
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.9e-150 534.6 648 53.1
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 9.9e-150 534.6 658 52.4
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-149 533.9 657 51.8
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.2e-149 533.5 642 53.3
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.9e-149 533.1 652 54.4
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 4.9e-149 532.3 646 53.1
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 6.4e-149 531.9 651 51.9
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 8.4e-149 531.6 659 54.3
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.1e-148 531.2 653 53.0
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 3.2e-148 529.6 653 53.9
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.4e-148 528.9 660 51.4
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.1e-147 526.9 653 51.9
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 6.0e-147 525.4 650 52.8
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 6.0e-147 525.4 649 54.2
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 6.0e-147 525.4 650 52.8
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 6.0e-147 525.4 659 54.5
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 7.8e-147 525.0 655 50.2
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.3e-146 524.2 651 52.8
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.9e-145 520.4 665 53.5
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-145 520.4 652 51.4
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 7.3e-145 518.5 667 52.9
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 2.1e-144 516.9 654 51.5
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.1e-144 516.9 653 54.7
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 2.1e-144 516.9 647 53.9
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.8e-144 516.5 659 53.4
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.2e-144 515.4 666 52.1
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.1e-143 514.6 674 52.7
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.1e-143 514.6 651 51.9
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 2.4e-143 513.5 658 50.6
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 4.0e-143 512.7 658 52.6
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 5.2e-143 512.3 652 53.1
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.9e-143 511.9 652 52.9
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 8.9e-143 511.5 660 52.7
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.2e-142 511.1 645 50.1
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 2.6e-142 510.0 649 53.3
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.2e-141 506.9 669 51.7
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.8e-141 506.1 643 52.3
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.4e-141 505.0 669 49.6
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 2.4e-140 503.4 662 51.8
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 9.3e-140 501.5 529 57.8
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 4.6e-139 499.2 642 51.6
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.7e-138 497.3 656 50.3
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 2.3e-138 496.9 638 50.3
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.9e-138 496.1 660 50.2
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 4.3e-137 492.7 665 49.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.6e-137 492.3 546 55.7
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.6e-137 492.3 546 55.7
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 5.6e-137 492.3 643 52.4
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 2.4e-135 486.9 656 50.6
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 4.0e-135 486.1 664 50.2
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 5.3e-135 485.7 661 49.8
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.8e-134 482.3 634 50.8
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 5.8e-134 482.3 652 50.2
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.6e-131 474.2 649 49.2
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 8.7e-130 468.4 663 49.0
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 2.5e-129 466.8 664 47.9
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.3e-129 466.5 660 47.9
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.4e-129 465.3 663 45.9
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.8e-128 462.6 611 50.1
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 4.0e-127 459.5 663 46.0
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 3.4e-126 456.4 605 48.9
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 2.9e-125 453.4 672 45.7
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 8.4e-125 451.8 660 46.8
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.4e-124 451.1 632 49.4
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.4e-124 450.3 672 46.1
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 4.6e-123 446.0 668 45.7
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 3.0e-122 443.4 641 48.7
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 5.1e-122 442.6 657 47.2
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-121 441.0 671 45.6
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 8.2e-120 435.3 667 46.3
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 3.1e-119 433.3 523 50.7
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 2.3e-114 417.2 637 44.3
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 5.3e-111 406.0 640 44.2
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.4e-108 397.9 640 44.4
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 7.2e-108 395.6 663 42.5
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 6.3e-104 382.5 540 47.0
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 2.5e-84 317.4 409 50.9
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.4e-74 285.0 646 38.1
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 8.8e-74 282.3 399 46.6
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.6e-73 280.8 402 49.8
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.8e-71 274.6 401 45.6
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 2.7e-70 270.8 633 35.2
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 2.3e-66 257.7 221 67.0
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.2e-62 245.4 267 53.9
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 6.6e-53 213.0 306 48.4
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.5e-52 211.1 481 36.0
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 8.6e-45 186.0 634 33.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.1e-44 185.7 274 41.6
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.4e-26 125.6 226 45.1
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.1e-23 115.9 107 54.2
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.6e-22 112.1 145 49.7
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 3.5e-22 110.9 77 74.0
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.0e-21 109.4 104 51.0
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.1e-20 105.9 67 88.1
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.4e-18 98.2 78 67.9
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 9.9e-17 92.8 77 64.9
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 2.5e-12 78.2 183 32.8
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 3.3e-12 77.8 387 25.1
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 5.6e-12 77.0 47 74.5
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-11 75.5 74 52.7
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.2e-11 73.6 57 56.1
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 8.1e-11 73.2 127 42.5
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.3e-08 65.9 473 23.3


User provided reference genes

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