Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13064 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 1.5e-34 149.1 78 100.0
SEGI_29217 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 3.7e-14 81.3 48 89.6
SEGI_33569 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 3.7e-14 81.3 48 89.6
AagrBONN_evm.TU.Sc2ySwM_362.876 Anthoceros agrestis HOM05D001092 ORTHO05D000923 1.2e-09 66.2 51 60.8
Pp3c22_21110 Physcomitrium patens HOM05D001092 ORTHO05D000923 1.2e-09 66.2 51 60.8
Nn1g00699 Nelumbo nucifera HOM05D001092 ORTHO05D000923 1.6e-09 65.9 48 72.9
ATR0829G162 Amborella trichopoda HOM05D001092 ORTHO05D000923 2.1e-09 65.5 51 62.7
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 3.6e-09 64.7 48 70.8
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 8.0e-09 63.5 48 68.8
TAR629G2120 Trochodendron aralioides HOM05D001092 ORTHO05D000923 8.0e-09 63.5 48 68.8
Ciclev10018424m.g Citrus clementina HOM05D001092 ORTHO05D000923 1.4e-08 62.8 48 70.8
Sabra01G0118800 Salix brachista HOM05D001092 ORTHO05D000923 1.4e-08 62.8 54 61.1
Mapoly0105s0039 Marchantia polymorpha HOM05D001092 ORTHO05D000923 2.3e-08 62.0 48 62.5
Pp3c18_1370 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.3e-08 62.0 50 60.0
Pp3c18_1376 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.3e-08 62.0 50 60.0
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 3.1e-08 61.6 48 68.8
PSO063G3710 Papaver somniferum HOM05D001092 ORTHO05D000923 3.1e-08 61.6 48 66.7
Potri.001G148800 Populus trichocarpa HOM05D001092 ORTHO05D000923 3.1e-08 61.6 54 59.3
AT4G17140 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 4.0e-08 61.2 48 66.7
CSS0002593 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 5.2e-08 60.8 48 64.6
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 6.8e-08 60.5 48 66.7
MBI04_g20742_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 8.9e-08 60.1 48 66.7
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 1.2e-07 59.7 48 66.7
Gohir.A03G003300 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.2e-07 59.7 48 66.7
Gohir.D03G169100 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.2e-07 59.7 48 66.7
Gorai.003G179200 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.2e-07 59.7 48 66.7
Cc08_g01550 Coffea canephora HOM05D001092 ORTHO05D000923 1.5e-07 59.3 48 64.6
ECA246G3294 Erigeron canadensis HOM05D001092 ORTHO05D000923 1.5e-07 59.3 48 64.6
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 1.5e-07 59.3 48 68.8
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 64.6
AL7G37590 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 64.6
A08p12900 Brassica napus HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 64.6
BolC8t48437H Brassica oleracea HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 64.6
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 64.6
Carub.0007s2427 Capsella rubella HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 64.6
CARHR223710 Cardamine hirsuta HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 64.6
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 64.6
TWI60G0589 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 2.0e-07 58.9 48 66.7
Cpa.g.sc98.53 Carica papaya HOM05D001092 ORTHO05D000923 2.6e-07 58.5 48 64.6
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 2.6e-07 58.5 48 64.6
Lsat_1_v5_gn_3_15901 Lactuca sativa HOM05D001092 ORTHO05D000923 2.6e-07 58.5 48 62.5
Zm00001eb390790 Zea mays HOM05D001092 ORTHO05D000923 2.6e-07 58.5 48 64.6
Duzib205G0058 Durio zibethinus HOM05D001092 ORTHO05D000923 3.4e-07 58.2 48 64.6
FAN04G0578 Fragaria x ananassa HOM05D001092 ORTHO05D000923 3.4e-07 58.2 48 66.7
FAN08G1156 Fragaria x ananassa HOM05D001092 ORTHO05D000923 3.4e-07 58.2 48 66.7
Sp7g17050 Schrenkiella parvula HOM05D001092 ORTHO05D000923 3.4e-07 58.2 48 62.5
CANSAT21G2480 Cannabis sativa HOM05D001092 ORTHO05D000923 4.4e-07 57.8 48 64.6
THA.LOC104814451 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 4.4e-07 57.8 48 62.5
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 4.4e-07 57.8 48 62.5
Glyma.11G039900 Glycine max HOM05D001092 ORTHO05D000923 5.8e-07 57.4 48 64.6
Psat2g175240 Pisum sativum HOM05D001092 ORTHO05D000923 5.8e-07 57.4 48 64.6
PGR031G0629 Punica granatum HOM05D001092 ORTHO05D000923 5.8e-07 57.4 48 64.6
TPR.G33938 Trifolium pratense HOM05D001092 ORTHO05D000923 5.8e-07 57.4 48 64.6
Thhalv10024176m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 7.5e-07 57.0 48 62.5
Peaxi162Scf00084g00118 Petunia axillaris HOM05D001092 ORTHO05D000923 7.5e-07 57.0 53 56.6
arahy.Tifrunner.gnm1.ann1.G3NGVJ Arachis hypogaea HOM05D001092 ORTHO05D000923 9.8e-07 56.6 48 64.6
arahy.Tifrunner.gnm1.ann1.PHJ2IJ Arachis hypogaea HOM05D001092 ORTHO05D000923 9.8e-07 56.6 48 64.6
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 9.8e-07 56.6 48 64.6
FAN18G3751 Fragaria x ananassa HOM05D001092 ORTHO05D000923 9.8e-07 56.6 48 64.6
Nitab4.5_0006135g0040 Nicotiana tabacum HOM05D001092 ORTHO05D000923 9.8e-07 56.6 48 62.5
Oeu033911.2 Olea europaea HOM05D001092 ORTHO05D000923 9.8e-07 56.6 48 60.4
Solyc08g077500.4 Solanum lycopersicum HOM05D001092 ORTHO05D000923 9.8e-07 56.6 53 56.6
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 9.8e-07 56.6 53 56.6
Thecc.03G236900 Theobroma cacao HOM05D001092 ORTHO05D000923 9.8e-07 56.6 48 62.5
CiPaw.12G058400 Carya illinoinensis HOM05D001092 ORTHO05D000923 1.3e-06 56.2 48 62.5
Gohir.A08G161600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.3e-06 56.2 48 60.4
Gohir.D08G181600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.3e-06 56.2 48 60.4
Nitab4.5_0001255g0080 Nicotiana tabacum HOM05D001092 ORTHO05D000923 1.3e-06 56.2 48 62.5
Aa31LG2G13220 Aethionema arabicum HOM05D001092 ORTHO05D000923 1.7e-06 55.8 48 60.4
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 1.7e-06 55.8 48 60.4
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 1.7e-06 55.8 48 60.4
COL.COLO4_06705 Corchorus olitorius HOM05D001092 ORTHO05D000923 2.2e-06 55.5 48 62.5
Sc07g0008990 Simmondsia chinensis HOM05D001092 ORTHO05D000923 2.2e-06 55.5 48 60.4
Actinidia03405 Actinidia chinensis HOM05D001092 ORTHO05D000923 2.9e-06 55.1 113 33.6
EL10Ac5g12216 Beta vulgaris HOM05D001092 ORTHO05D000923 2.9e-06 55.1 48 62.5
Ca_26022_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 2.9e-06 55.1 48 62.5
Ca_30453_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 2.9e-06 55.1 48 62.5
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 3.7e-06 54.7 48 60.4
Haze_08328 Corylus avellana HOM05D001092 ORTHO05D000923 3.7e-06 54.7 48 60.4
unitig_21.g20375 Utricularia gibba HOM05D001092 ORTHO05D000923 3.7e-06 54.7 48 58.3
Gorai.004G190500 Gossypium raimondii HOM05D001092 ORTHO05D000923 4.9e-06 54.3 48 58.3
Lj2g0026983 Lotus japonicus HOM05D001092 ORTHO05D000923 4.9e-06 54.3 53 54.7
CBR_g4878 Chara braunii HOM05D001092 ORTHO05D000923 6.4e-06 53.9 48 60.4
AUR62018801 Chenopodium quinoa HOM05D001092 ORTHO05D000923 6.4e-06 53.9 48 62.5
Migut.E00810 Erythranthe guttata HOM05D001092 ORTHO05D000923 6.4e-06 53.9 48 60.4
Lalb_Chr16g0379281 Lupinus albus HOM05D001092 ORTHO05D000923 6.4e-06 53.9 48 60.4
Rhsim11G0008300 Rhododendron simsii HOM05D001092 ORTHO05D000923 6.4e-06 53.9 48 60.4
Medtr5g013780 Medicago truncatula HOM05D001092 ORTHO05D000923 8.3e-06 53.5 48 60.4


User provided reference genes

Program Settings