Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.9e-98 362.5 180 100.0
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.2e-62 242.7 138 84.1
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 3.6e-60 235.3 138 81.9
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.0e-59 232.3 138 79.7
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 6.7e-59 231.1 138 80.4
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 6.7e-59 231.1 138 77.5
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 6.7e-59 231.1 138 79.0
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 8.8e-59 230.7 138 79.0
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 8.8e-59 230.7 138 78.3
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 8.8e-59 230.7 138 78.3
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.1e-58 230.3 138 78.3
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.1e-58 230.3 138 78.3
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.0e-58 229.6 138 79.0
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 2.6e-58 229.2 137 79.6
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 3.3e-58 228.8 138 77.5
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 3.3e-58 228.8 138 76.1
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 3.3e-58 228.8 138 76.1
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 4.4e-58 228.4 137 79.6
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 5.7e-58 228.0 138 77.5
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 5.7e-58 228.0 138 77.5
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 9.7e-58 227.3 138 76.8
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 9.7e-58 227.3 138 76.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 9.7e-58 227.3 138 76.8
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.3e-57 226.9 138 78.3
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-57 226.9 138 76.8
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-57 226.9 138 76.8
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.3e-57 226.9 138 76.8
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.7e-57 226.5 138 76.8
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.2e-57 226.1 136 77.2
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.2e-57 226.1 138 73.9
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.2e-57 226.1 138 77.5
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.7e-57 225.3 138 76.8
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 3.7e-57 225.3 138 77.5
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.7e-57 225.3 138 75.4
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.7e-57 225.3 138 75.4
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 4.8e-57 224.9 138 75.4
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 4.8e-57 224.9 138 75.4
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.8e-57 224.9 138 76.8
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 6.3e-57 224.6 138 78.3
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 8.2e-57 224.2 138 76.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.1e-56 223.8 138 76.8
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.1e-56 223.8 138 72.5
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.4e-56 223.4 138 75.4
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.4e-56 223.4 138 75.4
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.8e-56 223.0 138 73.9
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.8e-56 223.0 138 76.1
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.4e-56 222.6 138 74.6
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 2.4e-56 222.6 138 73.2
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 3.1e-56 222.2 136 76.5
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.1e-56 222.2 138 73.9
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.1e-56 222.2 138 76.1
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 4.1e-56 221.9 138 75.4
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.3e-56 221.5 138 74.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 6.9e-56 221.1 138 73.9
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 6.9e-56 221.1 138 73.9
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 9.1e-56 220.7 136 74.3
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 9.1e-56 220.7 138 72.5
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.2e-55 220.3 138 73.9
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.2e-55 220.3 138 76.1
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.2e-55 220.3 138 75.4
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.2e-55 220.3 145 73.1
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.5e-55 219.9 138 73.9
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.6e-55 219.2 136 75.0
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.6e-55 219.2 138 74.6
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.4e-55 218.8 138 76.1
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 4.5e-55 218.4 136 73.5
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 4.5e-55 218.4 138 74.6
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 5.9e-55 218.0 136 74.3
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 5.9e-55 218.0 136 74.3
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 7.7e-55 217.6 138 73.9
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 7.7e-55 217.6 136 73.5
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 7.7e-55 217.6 138 73.2
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 7.7e-55 217.6 138 72.5
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 1.0e-54 217.2 136 74.3
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.0e-54 217.2 138 72.5
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.3e-54 216.9 138 71.0
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.3e-54 216.9 138 72.5
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.7e-54 216.5 138 71.7
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-54 216.5 138 71.7
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-54 216.5 138 71.7
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.7e-54 216.5 138 70.3
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 2.9e-54 215.7 136 73.5
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 2.9e-54 215.7 136 73.5
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 2.9e-54 215.7 136 73.5
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 2.9e-54 215.7 136 73.5
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 2.9e-54 215.7 136 73.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 2.9e-54 215.7 136 73.5
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.9e-54 215.7 138 72.5
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 2.9e-54 215.7 138 73.9
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 2.9e-54 215.7 136 73.5
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 3.8e-54 215.3 136 72.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 3.8e-54 215.3 136 72.8
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 3.8e-54 215.3 136 72.8
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.8e-54 215.3 138 71.7
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 3.8e-54 215.3 136 72.1
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 3.8e-54 215.3 138 71.7
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 5.0e-54 214.9 137 72.3
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 5.0e-54 214.9 136 74.3
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 6.5e-54 214.5 136 71.3
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 6.5e-54 214.5 136 72.8
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.5e-54 214.5 138 71.7
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.1e-53 213.8 137 72.3
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.9e-53 213.0 138 73.2
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.5e-53 212.6 138 72.5
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 3.2e-53 212.2 137 71.5
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 3.2e-53 212.2 138 68.8
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 4.2e-53 211.8 139 72.7
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 4.2e-53 211.8 138 71.0
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 7.2e-53 211.1 137 70.1
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 1.2e-52 210.3 138 72.5
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.2e-52 210.3 139 71.9
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.7e-52 209.1 138 71.7
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.7e-52 209.1 138 71.7
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 3.6e-52 208.8 138 71.7
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 4.7e-52 208.4 139 70.5
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.8e-51 206.5 138 69.6
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 2.3e-51 206.1 139 69.8
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 5.7e-50 201.4 136 67.6
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 5.7e-50 201.4 138 71.0
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.1e-48 197.2 123 71.5
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.4e-48 196.8 125 76.8
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 7.0e-48 194.5 139 64.0
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.0e-47 193.0 162 57.4
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 2.6e-47 192.6 183 54.6
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.0e-46 190.7 138 67.4
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.9e-46 189.1 140 63.6
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 3.2e-45 185.7 139 60.4
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 1.5e-42 176.8 174 52.9
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 3.3e-42 175.6 112 74.1
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 4.8e-41 171.8 138 63.0
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 6.3e-41 171.4 102 77.5
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 8.2e-41 171.0 102 75.5
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 4.1e-40 168.7 102 74.5
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 4.1e-40 168.7 105 76.2
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.7e-39 166.0 136 62.5
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 3.5e-39 165.6 138 58.7
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.5e-39 165.2 99 76.8
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-38 163.7 100 77.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.7e-38 163.3 100 74.0
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 9.4e-37 157.5 136 55.1
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 6.1e-36 154.8 138 56.5
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.1e-32 144.1 105 61.9
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.2e-31 140.6 141 48.9
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.6e-28 129.0 109 62.4
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.7e-28 128.6 101 63.4
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 6.1e-28 128.3 138 49.3
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 8.8e-27 124.4 87 66.7
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.4e-26 122.5 78 73.1
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 3.7e-25 119.0 113 52.2
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 8.3e-25 117.9 110 52.7
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.9e-23 111.7 89 62.9
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 3.4e-18 95.9 61 72.1
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 3.2e-16 89.4 68 55.9
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 4.6e-15 85.5 52 78.8
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 7.5e-10 68.2 58 55.2
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 9.8e-10 67.8 54 55.6
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.9e-08 63.5 127 34.6
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 3.0e-06 56.2 36 72.2
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 3.9e-06 55.8 97 34.0


User provided reference genes

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