Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 0.0e+00 1365.1 674 100.0
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 8.9e-181 637.9 612 53.8
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.3e-179 634.0 626 53.4
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.9e-175 620.2 598 53.2
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.5e-175 619.8 607 52.1
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 4.0e-173 612.5 605 52.4
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 4.4e-172 609.0 625 50.7
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 7.6e-172 608.2 609 52.4
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-171 607.4 609 51.9
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.7e-171 607.1 620 51.5
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 3.8e-171 605.9 610 52.5
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 1.1e-170 604.4 600 52.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.4e-170 604.0 608 51.5
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 2.1e-169 600.1 605 52.2
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 4.6e-169 599.0 608 51.6
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.7e-168 597.0 606 52.3
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 3.0e-168 596.3 641 49.6
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 8.7e-168 594.7 606 51.2
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 2.5e-167 593.2 604 52.5
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 3.3e-167 592.8 602 51.3
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 7.3e-167 591.7 600 51.7
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.2e-166 590.9 599 52.4
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.6e-166 590.5 609 51.6
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.6e-166 590.5 606 52.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 2.8e-166 589.7 604 51.8
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 3.6e-166 589.3 603 51.9
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 4.7e-166 589.0 599 51.4
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 8.1e-166 588.2 606 52.0
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 8.1e-166 588.2 607 50.7
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.8e-165 587.0 611 50.9
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.4e-165 586.6 602 52.5
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 2.4e-165 586.6 622 51.3
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 3.1e-165 586.3 603 52.1
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 3.1e-165 586.3 609 51.4
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 6.9e-165 585.1 603 52.1
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.2e-164 584.3 600 51.0
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.6e-164 583.2 601 52.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 2.6e-164 583.2 609 52.2
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 3.4e-164 582.8 609 50.4
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 5.8e-164 582.0 631 49.8
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 5.8e-164 582.0 605 51.2
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 7.6e-164 581.6 610 50.7
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 9.9e-164 581.3 603 51.1
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 9.9e-164 581.3 603 51.4
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 9.9e-164 581.3 603 51.2
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 8.4e-163 578.2 603 50.7
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.4e-162 576.6 601 51.4
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 2.4e-162 576.6 608 50.3
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 4.2e-162 575.9 606 51.3
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 7.1e-162 575.1 633 49.8
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 7.1e-162 575.1 659 48.4
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 7.1e-162 575.1 608 50.3
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 2.7e-161 573.2 603 50.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 2.7e-161 573.2 603 50.4
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.0e-160 571.2 603 50.6
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 1.3e-160 570.9 644 47.4
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.7e-160 570.5 601 51.4
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 3.9e-160 569.3 603 50.2
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 6.6e-160 568.5 607 50.4
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 8.7e-160 568.2 602 50.3
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.5e-159 567.4 610 50.0
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.3e-159 565.8 601 51.1
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.3e-158 564.3 605 49.8
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.6e-158 563.9 600 50.2
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.6e-158 563.9 605 49.4
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 3.6e-158 562.8 617 48.8
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.1e-157 561.2 600 49.0
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.8e-157 560.5 633 49.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 2.4e-157 560.1 678 46.5
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.0e-157 559.3 576 52.1
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 5.3e-157 558.9 603 49.9
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 9.0e-157 558.1 600 48.5
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.2e-156 557.8 600 48.7
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 9.9e-156 554.7 603 48.8
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.2e-155 553.5 600 48.7
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 4.9e-155 552.4 490 56.7
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 2.4e-154 550.1 610 48.4
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 9.3e-154 548.1 610 48.2
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 2.1e-153 547.0 610 48.2
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.6e-153 545.8 601 50.6
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 7.9e-153 545.0 630 47.3
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 7.9e-153 545.0 636 48.1
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 3.3e-151 539.7 626 47.0
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.6e-150 537.3 604 49.5
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.8e-149 533.9 479 57.2
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-149 531.9 602 47.5
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 3.4e-148 529.6 651 45.3
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.6e-148 528.5 602 48.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-146 521.9 518 51.5
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 6.7e-144 515.4 627 46.1
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-142 511.1 557 48.7
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.4e-140 503.1 496 53.6
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-139 500.4 557 48.7
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 3.2e-138 496.5 620 46.3
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.0e-136 490.0 602 45.5
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 4.8e-134 482.6 604 45.7
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.0e-132 477.2 603 44.8
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.4e-125 453.8 609 42.5
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 6.5e-123 445.7 609 43.0
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.8e-120 437.6 601 42.8
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 2.5e-114 417.2 424 51.9
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 4.7e-113 412.9 422 50.2
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.3e-111 406.8 599 39.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-110 404.4 423 51.1
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 2.1e-105 387.5 352 56.5
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.4e-104 384.8 480 46.9
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.4e-104 384.8 480 46.9
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.4e-103 380.2 425 49.2
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.2e-97 361.7 314 58.9
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 2.6e-95 354.0 349 53.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-92 344.0 460 44.1
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 5.7e-87 326.2 442 41.2
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.6e-83 312.8 535 37.2
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 3.1e-80 303.9 344 48.0
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 4.9e-78 296.6 345 46.1
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 7.8e-76 289.3 314 51.0
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.3e-75 287.7 652 32.1
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 7.5e-71 272.7 573 31.8
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.8e-71 272.3 355 44.8
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.9e-70 270.8 273 53.5
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-53 213.8 229 48.9
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.2e-52 212.2 703 28.2
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.2e-49 199.9 196 51.5
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.2e-47 195.7 200 50.5
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 3.6e-41 174.1 239 40.6
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.4e-40 172.2 176 52.3
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 4.2e-37 160.6 364 31.3
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 2.3e-35 154.8 132 60.6
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-34 152.5 165 52.7
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.1e-33 148.3 152 52.6
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 6.9e-32 143.3 105 64.8
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 4.5e-31 140.6 111 60.4
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.2e-30 138.3 159 46.5
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 4.9e-30 137.1 355 29.6
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.2e-23 115.9 136 44.1
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.3e-22 112.5 86 60.5
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.5e-18 99.0 96 50.0
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 9.7e-18 96.3 72 58.3
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.6e-17 95.5 82 61.0
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-15 87.4 151 35.8
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 2.5e-13 81.6 134 38.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 2.7e-12 78.2 70 51.4
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-08 65.1 75 48.0
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 3.4e-07 61.2 79 45.6


User provided reference genes

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