Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11617 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 2.1e-29 131.7 68 100.0
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 2.1e-29 131.7 68 100.0
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 2.2e-18 95.1 48 95.8
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 2.2e-18 95.1 48 95.8
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 2.4e-17 91.7 58 81.0
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 3.1e-17 91.3 49 91.8
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 7.0e-17 90.1 49 89.8
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 7.0e-17 90.1 49 89.8
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 7.0e-17 90.1 49 89.8
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 7.0e-17 90.1 49 89.8
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 7.0e-17 90.1 49 89.8
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 7.0e-17 90.1 49 89.8
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 7.0e-17 90.1 49 89.8
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 9.1e-17 89.7 44 97.7
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 9.1e-17 89.7 49 89.8
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 9.1e-17 89.7 49 89.8
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 9.1e-17 89.7 49 89.8
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 9.1e-17 89.7 47 93.6
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 9.1e-17 89.7 48 91.7
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 1.2e-16 89.4 48 91.7
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 1.2e-16 89.4 47 91.5
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 1.6e-16 89.0 49 87.8
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 1.6e-16 89.0 49 87.8
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 1.6e-16 89.0 48 91.7
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 1.6e-16 89.0 44 97.7
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 1.6e-16 89.0 49 87.8
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 1.6e-16 89.0 49 89.8
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 2.0e-16 88.6 49 87.8
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 2.7e-16 88.2 48 89.6
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.7e-16 88.2 48 89.6
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.7e-16 88.2 48 89.6
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 2.7e-16 88.2 48 89.6
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 2.7e-16 88.2 48 91.7
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 2.7e-16 88.2 48 89.6
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 2.7e-16 88.2 48 89.6
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 3.5e-16 87.8 49 87.8
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 3.5e-16 87.8 46 93.5
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 3.5e-16 87.8 48 89.6
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 3.5e-16 87.8 49 87.8
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 4.5e-16 87.4 48 91.7
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 4.5e-16 87.4 49 87.8
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 4.5e-16 87.4 49 85.7
MCO13G593 Micromonas commoda HOM05D002696 ORTHO05D003940 4.5e-16 87.4 55 83.6
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 4.5e-16 87.4 49 87.8
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.5e-16 87.4 49 87.8
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 5.9e-16 87.0 49 87.8
FAN06G2045 Fragaria x ananassa HOM05D000009 ORTHO05D000008 5.9e-16 87.0 58 79.3
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 5.9e-16 87.0 49 85.7
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 5.9e-16 87.0 49 85.7
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 5.9e-16 87.0 49 85.7
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 5.9e-16 87.0 47 89.4
Lalb_Chr01g0008021 Lupinus albus HOM05D002696 ORTHO05D003940 5.9e-16 87.0 49 91.8
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 5.9e-16 87.0 49 91.8
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 5.9e-16 87.0 48 87.5
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 5.9e-16 87.0 48 87.5
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 7.7e-16 86.7 50 90.0
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 7.7e-16 86.7 48 87.5
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 7.7e-16 86.7 49 85.7
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 7.7e-16 86.7 49 85.7
PRCOL_00001774 Prasinoderma coloniale HOM05D002696 ORTHO05D003940 7.7e-16 86.7 77 62.3
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 7.7e-16 86.7 49 85.7
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 7.7e-16 86.7 49 85.7
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 7.7e-16 86.7 49 85.7
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.0e-15 86.3 49 85.7
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.0e-15 86.3 49 85.7
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 1.0e-15 86.3 48 87.5
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 1.0e-15 86.3 49 85.7
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 1.0e-15 86.3 46 91.3
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 1.0e-15 86.3 46 91.3
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 1.3e-15 85.9 48 87.5
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 83.7
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 1.3e-15 85.9 48 87.5
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.3e-15 85.9 48 89.6
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.3e-15 85.9 48 91.7
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.3e-15 85.9 48 87.5
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 89.8
FvH4_7g27331 Fragaria vesca HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 89.8
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 89.8
FvH4_7g27643 Fragaria vesca HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 89.8
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 89.8
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 89.8
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 89.8
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 89.8
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 1.3e-15 85.9 48 87.5
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 1.3e-15 85.9 46 91.3
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.3e-15 85.9 49 85.7
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 1.7e-15 85.5 49 89.8
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 1.7e-15 85.5 49 89.8
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 1.7e-15 85.5 48 87.5
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 1.7e-15 85.5 48 87.5
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 1.7e-15 85.5 48 87.5
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 1.7e-15 85.5 48 87.5
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 1.7e-15 85.5 48 87.5
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.7e-15 85.5 50 88.0
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 1.7e-15 85.5 49 89.8
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 1.7e-15 85.5 48 87.5
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 1.7e-15 85.5 48 85.4
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 2.2e-15 85.1 43 95.3
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 2.2e-15 85.1 43 95.3
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 2.2e-15 85.1 43 95.3
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 2.2e-15 85.1 49 83.7
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 2.2e-15 85.1 43 95.3
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 2.2e-15 85.1 48 85.4
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 2.2e-15 85.1 42 97.6
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 2.9e-15 84.7 49 89.8
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 2.9e-15 84.7 49 89.8
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 2.9e-15 84.7 49 89.8
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.9e-15 84.7 48 85.4
TPR.G39457 Trifolium pratense HOM05D002696 ORTHO05D003940 2.9e-15 84.7 49 89.8
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 3.8e-15 84.3 48 85.4
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 3.8e-15 84.3 46 89.1
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 3.8e-15 84.3 49 85.7
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 5.0e-15 84.0 43 93.0
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 6.5e-15 83.6 49 83.7
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 6.5e-15 83.6 49 81.6
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 6.5e-15 83.6 58 74.1
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 6.5e-15 83.6 49 83.7
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 8.5e-15 83.2 43 93.0
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.1e-14 82.8 47 87.2
FAN10G3693 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.1e-14 82.8 43 90.7
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 1.5e-14 82.4 48 83.3
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.5e-14 82.4 48 83.3
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 1.5e-14 82.4 48 83.3
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 1.5e-14 82.4 48 83.3
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.5e-14 82.4 48 83.3
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 1.5e-14 82.4 48 83.3
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 1.5e-14 82.4 46 87.0
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.9e-14 82.0 43 90.7
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.9e-14 82.0 49 79.6
FAN01G1139 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.9e-14 82.0 49 87.8
Aqoxy7G02845 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 3.2e-14 81.3 43 88.4
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 7.2e-14 80.1 43 88.4
Cre02.g086650 Chlamydomonas reinhardtii HOM05D002696 ORTHO05D003940 2.0e-11 72.0 52 69.2
FAN10G0536 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.8e-10 68.2 54 72.2
CBR_g40808 Chara braunii HOM05D002696 ORTHO05D003940 1.4e-09 65.9 31 96.8
FvH4_7g28372 Fragaria vesca HOM05D002696 ORTHO05D023279 1.8e-09 65.5 40 87.5
FAN06G0913 Fragaria x ananassa HOM05D002696 ORTHO05D019089 1.8e-09 65.5 40 87.5
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.8e-09 65.5 40 87.5
SalBow8G2689 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.8e-09 65.5 38 84.2
Cfa024848 Carpinus fangiana HOM05D002696 ORTHO05D003940 1.1e-06 56.2 48 60.4


User provided reference genes

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