Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.2e-281 970.7 484 100.0
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 6.8e-207 724.2 363 100.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.2e-108 396.4 347 61.1
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.2e-108 396.4 352 60.2
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.0e-101 374.8 352 56.5
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.3e-101 374.4 339 60.2
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.7e-101 374.0 358 57.3
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 7.2e-100 368.6 339 58.7
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.0e-98 364.8 346 56.6
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.7e-96 357.5 348 55.7
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.1e-95 354.8 356 54.2
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.4e-95 354.4 356 53.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 5.4e-95 352.4 347 56.5
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 2.0e-94 350.5 360 52.8
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.8e-90 337.4 356 52.0
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.1e-90 336.7 367 51.8
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 4.0e-90 336.3 342 52.3
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.0e-89 334.0 354 52.5
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 2.0e-89 334.0 357 51.8
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 5.8e-89 332.4 317 55.8
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 5.8e-89 332.4 350 52.6
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 2.2e-88 330.5 354 52.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.9e-88 329.3 359 51.5
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.9e-88 329.3 359 51.5
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 8.3e-88 328.6 357 51.3
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.1e-87 328.2 350 53.1
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.1e-87 328.2 345 51.6
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.2e-87 326.6 363 50.4
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 4.1e-87 326.2 341 51.6
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 4.1e-87 326.2 356 51.7
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 7.0e-87 325.5 356 50.8
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.0e-87 325.5 363 51.8
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 9.2e-87 325.1 321 52.3
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.2e-86 324.7 358 49.2
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.6e-86 324.3 363 51.0
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.6e-86 324.3 355 51.3
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 2.0e-86 323.9 353 49.9
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.7e-86 323.6 357 51.8
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.5e-86 323.2 357 49.3
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 7.8e-86 322.0 337 53.4
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.0e-85 321.6 337 50.7
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 1.0e-85 321.6 358 49.7
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 1.7e-85 320.9 347 52.7
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.3e-85 320.5 339 50.1
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 2.3e-85 320.5 352 49.4
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 2.3e-85 320.5 326 54.0
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.0e-85 320.1 358 50.3
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 3.0e-85 320.1 341 49.6
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.0e-85 320.1 239 64.4
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 3.0e-85 320.1 371 50.1
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.9e-85 319.7 318 52.2
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 3.9e-85 319.7 315 54.6
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 6.6e-85 318.9 317 54.3
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.5e-84 317.8 313 54.6
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.3e-84 316.2 356 50.0
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 5.6e-84 315.8 338 52.7
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 5.6e-84 315.8 366 50.3
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 5.6e-84 315.8 316 53.8
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.6e-84 315.8 319 52.0
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 7.3e-84 315.5 344 51.5
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.2e-83 314.7 338 50.9
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.2e-83 314.7 341 51.3
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.6e-83 314.3 357 50.1
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 2.1e-83 313.9 345 51.0
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.1e-83 313.9 324 51.2
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.8e-83 313.5 338 52.7
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 2.8e-83 313.5 366 49.5
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.8e-83 313.5 346 50.3
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.6e-83 313.2 339 50.7
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.6e-83 313.2 318 50.9
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.7e-83 312.8 359 49.6
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 8.0e-83 312.0 359 49.9
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.4e-82 311.2 340 52.1
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-82 310.8 340 51.8
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.8e-82 310.8 322 52.2
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.3e-82 310.5 349 49.6
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 2.3e-82 310.5 329 50.2
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.1e-82 310.1 338 50.9
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 3.1e-82 310.1 245 61.6
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 4.0e-82 309.7 338 49.1
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.0e-82 309.7 335 51.3
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.2e-82 309.3 340 51.5
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 6.8e-82 308.9 318 51.6
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 8.9e-82 308.5 338 50.6
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 8.9e-82 308.5 349 48.4
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 8.9e-82 308.5 338 51.2
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.2e-81 308.1 335 51.3
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.2e-81 308.1 251 60.6
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.5e-81 307.8 320 51.2
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.5e-81 307.8 316 52.5
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.5e-81 307.8 337 50.7
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 2.0e-81 307.4 343 49.9
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 2.6e-81 307.0 335 51.9
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 3.4e-81 306.6 315 52.7
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 4.4e-81 306.2 338 50.3
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.4e-81 306.2 336 50.3
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 7.5e-81 305.4 319 50.8
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 7.5e-81 305.4 246 61.4
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 9.8e-81 305.1 315 52.4
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 9.8e-81 305.1 343 51.3
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.7e-80 304.3 249 59.0
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.7e-80 304.3 351 50.1
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.2e-80 303.9 321 51.1
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 4.9e-80 302.8 316 51.3
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 6.4e-80 302.4 318 52.5
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-79 301.6 316 50.9
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.1e-79 301.6 365 49.0
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.4e-79 301.2 325 52.0
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.9e-79 300.8 311 52.4
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 1.9e-79 300.8 243 60.5
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.4e-79 300.4 351 49.3
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 3.2e-79 300.1 272 57.7
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 3.2e-79 300.1 315 52.1
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 7.0e-79 298.9 368 47.8
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.6e-78 297.7 316 51.6
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.6e-78 297.7 349 50.1
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.7e-78 297.0 344 49.4
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.7e-78 297.0 345 48.1
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 3.5e-78 296.6 336 49.7
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 4.6e-78 296.2 253 59.7
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.0e-77 295.0 336 49.4
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.7e-77 294.3 280 56.4
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 3.9e-77 293.1 253 58.9
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 5.1e-77 292.7 274 54.4
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-76 291.2 339 48.1
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.5e-76 291.2 243 60.9
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 1.9e-76 290.8 315 50.8
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 3.3e-76 290.0 340 47.9
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 4.3e-76 289.7 240 59.6
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 5.6e-76 289.3 236 60.6
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 9.5e-76 288.5 339 47.2
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.2e-75 288.1 285 53.7
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.6e-75 287.7 323 49.8
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.7e-75 286.2 316 49.1
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 8.9e-74 282.0 360 46.7
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 4.4e-73 279.6 345 47.5
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 4.4e-73 279.6 372 46.2
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.3e-72 278.1 321 48.0
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 4.9e-72 276.2 348 47.4
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.4e-71 274.6 240 55.8
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 3.2e-71 273.5 240 55.8
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 5.4e-71 272.7 345 47.2
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-70 271.2 339 46.6
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.7e-70 270.4 257 52.9
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 4.6e-70 269.6 225 57.3
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.9e-69 266.5 234 55.1
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 4.3e-68 263.1 340 44.7
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.5e-68 261.9 185 64.3
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 6.2e-67 259.2 171 70.2
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 2.7e-62 243.8 455 37.6
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.8e-58 231.1 336 41.4
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.3e-45 188.3 188 48.9
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 5.8e-41 172.9 125 67.2
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.5e-36 158.3 309 35.6
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 3.7e-35 153.7 117 58.1
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 6.5e-32 142.9 334 34.7
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 9.4e-23 112.5 83 61.4
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 2.7e-22 110.9 94 59.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.5e-20 105.1 137 41.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.5e-20 105.1 137 41.6
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.7e-20 103.2 99 51.5
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 6.3e-19 99.8 148 37.8
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 3.9e-13 80.5 220 29.5
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 2.0e-12 78.2 69 43.5
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.8e-11 74.3 131 33.6
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 5.9e-09 66.6 47 59.6
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 3.2e-07 60.8 50 62.0
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 7.2e-07 59.7 49 55.1


User provided reference genes

Program Settings