Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10684 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 5.5e-68 260.8 126 100.0
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 3.3e-44 181.8 97 90.7
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 2.2e-40 169.1 107 76.6
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 3.7e-40 168.3 97 81.4
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 6.4e-40 167.5 97 79.4
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 6.4e-40 167.5 110 74.5
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 1.1e-39 166.8 110 74.5
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 1.4e-39 166.4 97 80.4
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 1.4e-39 166.4 97 79.4
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 2.4e-39 165.6 110 73.6
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 2.4e-39 165.6 110 72.7
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 3.2e-39 165.2 110 73.6
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 4.1e-39 164.9 97 80.4
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 5.4e-39 164.5 110 72.7
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 5.4e-39 164.5 110 72.7
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 7.1e-39 164.1 107 75.7
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 7.1e-39 164.1 110 72.7
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 7.1e-39 164.1 110 72.7
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 7.1e-39 164.1 97 78.4
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 7.1e-39 164.1 110 72.7
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 9.2e-39 163.7 110 71.8
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 9.2e-39 163.7 97 78.4
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 1.2e-38 163.3 110 72.7
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 1.2e-38 163.3 110 70.9
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 1.6e-38 162.9 110 71.8
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.6e-38 162.9 110 70.9
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 1.6e-38 162.9 97 78.4
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 2.1e-38 162.5 110 71.8
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 2.1e-38 162.5 97 77.3
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 2.1e-38 162.5 97 78.4
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 2.1e-38 162.5 110 70.0
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 2.1e-38 162.5 110 71.8
ClCG01G011910 Citrullus lanatus HOM05D004510 ORTHO05D005302 2.7e-38 162.2 110 71.8
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 2.7e-38 162.2 110 71.8
Cpa.g.sc32.21 Carica papaya HOM05D004510 ORTHO05D005302 3.5e-38 161.8 110 72.7
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 3.5e-38 161.8 110 70.9
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 3.5e-38 161.8 110 71.8
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 3.5e-38 161.8 110 70.9
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 4.6e-38 161.4 97 77.3
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 4.6e-38 161.4 110 72.7
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 1.0e-37 160.2 97 76.3
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 1.0e-37 160.2 107 71.0
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 1.3e-37 159.8 110 70.0
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 1.3e-37 159.8 110 70.9
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.7e-37 159.5 110 69.1
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.7e-37 159.5 110 69.1
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.7e-37 159.5 110 69.1
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 1.7e-37 159.5 110 71.8
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 3.0e-37 158.7 110 70.9
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 3.0e-37 158.7 110 69.1
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 3.0e-37 158.7 97 74.2
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 3.9e-37 158.3 110 70.0
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 5.1e-37 157.9 97 74.2
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 5.1e-37 157.9 110 70.9
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 5.1e-37 157.9 110 68.2
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 5.1e-37 157.9 110 70.0
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 5.1e-37 157.9 110 68.2
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 6.6e-37 157.5 97 75.3
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 8.6e-37 157.1 97 75.3
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 8.6e-37 157.1 97 75.3
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 1.1e-36 156.8 97 76.3
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 1.9e-36 156.0 110 68.2
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 2.5e-36 155.6 113 68.1
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 3.3e-36 155.2 110 68.2
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 3.3e-36 155.2 113 68.1
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 4.3e-36 154.8 95 75.8
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 4.3e-36 154.8 97 72.2
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 7.3e-36 154.1 107 70.1
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 9.5e-36 153.7 110 69.1
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 9.5e-36 153.7 110 67.3
RcHm_v2.0_Chr1g0324351 Rosa chinensis HOM05D004510 ORTHO05D005302 1.6e-35 152.9 97 71.1
RcHm_v2.0_Chr5g0016631 Rosa chinensis HOM05D004510 ORTHO05D005302 2.1e-35 152.5 97 71.1
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 3.6e-35 151.8 110 69.1
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 8.1e-35 150.6 98 73.5
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 8.1e-35 150.6 98 73.5
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 8.1e-35 150.6 97 71.1
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 1.1e-34 150.2 110 66.4
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 1.1e-34 150.2 113 66.4
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.1e-34 150.2 98 73.5
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.1e-34 150.2 93 74.2
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 1.1e-34 150.2 113 65.5
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 1.4e-34 149.8 110 67.3
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 1.8e-34 149.4 113 66.4
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 2.3e-34 149.1 113 65.5
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 3.1e-34 148.7 110 66.4
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 6.8e-34 147.5 92 76.1
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 1.2e-33 146.7 97 72.2
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 1.2e-33 146.7 97 72.2
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 1.5e-33 146.4 110 62.7
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 2.0e-33 146.0 110 66.4
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 2.0e-33 146.0 97 71.1
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 2.0e-33 146.0 97 71.1
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 2.0e-33 146.0 97 71.1
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 2.0e-33 146.0 97 71.1
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 2.0e-33 146.0 110 66.4
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 2.6e-33 145.6 97 71.1
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 2.6e-33 145.6 97 71.1
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 2.6e-33 145.6 97 71.1
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 2.6e-33 145.6 97 71.1
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 2.6e-33 145.6 97 71.1
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 2.6e-33 145.6 97 71.1
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 2.6e-33 145.6 126 60.3
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 3.4e-33 145.2 106 67.0
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 4.4e-33 144.8 110 63.6
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 4.4e-33 144.8 110 66.4
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 5.8e-33 144.4 107 66.4
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 7.6e-33 144.1 110 65.5
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 9.9e-33 143.7 110 65.5
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 9.9e-33 143.7 110 65.5
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 1.7e-32 142.9 110 64.5
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 2.2e-32 142.5 97 70.1
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 2.2e-32 142.5 106 65.1
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 2.9e-32 142.1 110 63.6
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 1.4e-31 139.8 106 65.1
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 4.1e-31 138.3 97 70.1
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 7.1e-31 137.5 95 69.5
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 1.6e-30 136.3 97 66.0
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 7.8e-30 134.0 97 68.0
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 1.1e-28 130.2 106 62.3
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 8.4e-24 114.0 97 59.8
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 2.3e-21 105.9 107 49.5
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 3.3e-20 102.1 96 54.2
CDE08G0681 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 9.6e-20 100.5 75 66.7
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 2.8e-19 99.0 82 62.2
Hma1.2p1_0063F.1_g034470 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 3.1e-18 95.5 74 63.5
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-14 82.4 77 55.8


User provided reference genes

Program Settings