Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09700 Sequoiadendron giganteum HOM05D002943 ORTHO05D002685 1.1e-43 179.9 115 100.0
TPR.G9116 Trifolium pratense HOM05D002943 ORTHO05D002685 1.0e-23 113.6 112 60.7
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 4.2e-22 108.2 115 69.6
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 4.2e-22 108.2 115 67.8
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 7.2e-22 107.5 96 53.1
Oeu054737.1 Olea europaea HOM05D009278 ORTHO05D002685 6.1e-21 104.4 96 70.8
SEGI_03976 Sequoiadendron giganteum HOM05D002943 ORTHO05D002685 7.9e-21 104.0 98 84.7
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 2.3e-20 102.4 115 68.7
MD15G1305300 Malus domestica HOM05D009278 ORTHO05D002685 7.4e-19 97.4 96 67.7
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 1.3e-15 86.7 115 60.0
arahy.Tifrunner.gnm1.ann1.NISQ8K Arachis hypogaea HOM05D002943 ORTHO05D002685 2.9e-15 85.5 99 38.4
AUR62000261 Chenopodium quinoa HOM05D002943 ORTHO05D002685 9.4e-14 80.5 44 77.3
Cc03_g10690 Coffea canephora HOM05D002943 ORTHO05D002685 2.1e-13 79.3 83 48.2
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 2.7e-13 79.0 115 48.7
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 6.1e-13 77.8 101 41.6
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 7.9e-13 77.4 83 45.8
VMungo0720G0375 Vigna mungo HOM05D002943 ORTHO05D002685 1.4e-12 76.6 157 42.0
Lj5g0020766 Lotus japonicus HOM05D002943 ORTHO05D002685 3.9e-12 75.1 44 70.5
Cpa.g.sc52.53 Carica papaya HOM05D002943 ORTHO05D002685 6.7e-12 74.3 44 70.5
Atru.chr5.1459 Acer truncatum HOM05D002943 ORTHO05D002685 2.5e-11 72.4 44 70.5
MBI04_g36449_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 5.7e-11 71.2 45 68.9
Hma1.2p1_0667F.1_g199660 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 7.4e-11 70.9 39 76.9
PSO210G2619 Papaver somniferum HOM05D002943 ORTHO05D002685 7.4e-11 70.9 44 65.9
PSO761G0421 Papaver somniferum HOM05D002943 ORTHO05D002685 7.4e-11 70.9 44 65.9
Oeu012607.1 Olea europaea HOM05D002943 ORTHO05D002685 9.7e-11 70.5 42 64.3
Psat6g060720 Pisum sativum HOM05D002943 ORTHO05D002685 9.7e-11 70.5 39 76.9
CANSAT56G2303 Cannabis sativa HOM05D002943 ORTHO05D002685 1.3e-10 70.1 39 76.9
COL.COLO4_09075 Corchorus olitorius HOM05D002943 ORTHO05D002685 1.3e-10 70.1 44 65.9
Gohir.A08G045160 Gossypium hirsutum HOM05D002943 ORTHO05D002685 1.3e-10 70.1 44 65.9
Gohir.D08G055200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 1.3e-10 70.1 44 65.9
Gorai.004G055700 Gossypium raimondii HOM05D002943 ORTHO05D002685 1.3e-10 70.1 44 65.9
Prupe.8G239500 Prunus persica HOM05D002943 ORTHO05D002685 1.3e-10 70.1 44 65.9
Thecc.01G277000 Theobroma cacao HOM05D002943 ORTHO05D002685 1.3e-10 70.1 44 65.9
Lj4A173G12 Lonicera japonica HOM05D002943 ORTHO05D002685 1.7e-10 69.7 42 64.3
DCAR_012486 Daucus carota HOM05D002943 ORTHO05D002685 2.2e-10 69.3 84 64.3
Glyma.02G146800 Glycine max HOM05D002943 ORTHO05D002685 2.2e-10 69.3 39 76.9
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 2.2e-10 69.3 58 55.2
Duzib138G1878 Durio zibethinus HOM05D002943 ORTHO05D002685 2.8e-10 68.9 39 74.4
Lsat_1_v5_gn_4_28161 Lactuca sativa HOM05D002943 ORTHO05D002685 2.8e-10 68.9 44 68.2
Actinidia36393 Actinidia chinensis HOM05D002943 ORTHO05D002685 3.7e-10 68.6 42 61.9
Eucgr.K03366 Eucalyptus grandis HOM05D002943 ORTHO05D002685 3.7e-10 68.6 39 74.4
Peaxi162Scf00641g00318 Petunia axillaris HOM05D002943 ORTHO05D002685 3.7e-10 68.6 39 74.4
Cfa006157 Carpinus fangiana HOM05D002943 ORTHO05D002685 4.8e-10 68.2 39 74.4
SalBow4G2517 Salvia bowleyana HOM05D002943 ORTHO05D002685 4.8e-10 68.2 39 71.8
THA.LOC104815938 Tarenaya hassleriana HOM05D002943 ORTHO05D002685 4.8e-10 68.2 39 71.8
Nn4g26296 Nelumbo nucifera HOM05D002943 ORTHO05D002685 6.3e-10 67.8 39 71.8
Phvul.007G172600 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 6.3e-10 67.8 39 74.4
RcHm_v2.0_Chr6g0290821 Rosa chinensis HOM05D002943 ORTHO05D002685 6.3e-10 67.8 39 76.9
AagrBONN_evm.TU.Sc2ySwM_368.1648 Anthoceros agrestis HOM05D002943 ORTHO05D002685 8.2e-10 67.4 116 31.9
ClCG09G007120 Citrullus lanatus HOM05D002943 ORTHO05D002685 1.1e-09 67.0 39 71.8
CsaV3_7G028040 Cucumis sativus L. HOM05D002943 ORTHO05D002685 1.1e-09 67.0 39 71.8
AL6G50270 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.4e-09 66.6 44 65.9
AT4G02730 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 1.4e-09 66.6 44 65.9
CARHR251070 Cardamine hirsuta HOM05D002943 ORTHO05D002685 1.4e-09 66.6 44 65.9
Haze_04694 Corylus avellana HOM05D002943 ORTHO05D002685 1.4e-09 66.6 39 71.8
Thhalv10028762m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 1.4e-09 66.6 44 65.9
Nitab4.5_0004318g0010 Nicotiana tabacum HOM05D002943 ORTHO05D002685 1.8e-09 66.2 39 69.2
Nitab4.5_0005971g0020 Nicotiana tabacum HOM05D002943 ORTHO05D002685 1.8e-09 66.2 39 69.2
BcaB05g23663 Brassica carinata HOM05D002943 ORTHO05D002685 2.4e-09 65.9 44 63.6
Sed0026548 Sechium edule HOM05D002943 ORTHO05D002685 2.4e-09 65.9 39 69.2
Carub.0006s3437 Capsella rubella HOM05D002943 ORTHO05D002685 3.1e-09 65.5 44 63.6
Sp6g02690 Schrenkiella parvula HOM05D002943 ORTHO05D002685 3.1e-09 65.5 39 74.4
Ca_09752_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 4.1e-09 65.1 39 69.2
PGR044G0058 Punica granatum HOM05D002943 ORTHO05D002685 4.1e-09 65.1 40 75.0
Lalb_Chr21g0306431 Lupinus albus HOM05D002943 ORTHO05D002685 6.9e-09 64.3 39 69.2
MD03G1263200 Malus domestica HOM05D002943 ORTHO05D002685 9.1e-09 63.9 44 63.6
Medtr1g072140 Medicago truncatula HOM05D002943 ORTHO05D002685 1.2e-08 63.5 39 69.2
QL12p021366 Quercus lobata HOM05D002943 ORTHO05D002685 1.2e-08 63.5 39 71.8
AagrBONN_evm.TU.Sc2ySwM_262.4 Anthoceros agrestis HOM05D009278 ORTHO05D002685 2.0e-08 62.8 144 43.1
HPP92_017535 Vanilla planifolia HOM05D002943 ORTHO05D002685 2.0e-08 62.8 39 71.8
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 5.9e-08 61.2 85 40.0
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 7.7e-08 60.8 44 63.6
VMungo0251G3091 Vigna mungo HOM05D002943 ORTHO05D020395 7.7e-08 60.8 97 36.1
Ciclev10033651m.g Citrus clementina HOM05D002943 ORTHO05D002685 1.0e-07 60.5 33 78.8
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.3e-07 60.1 115 24.3
A06p18050 Brassica napus HOM05D009278 ORTHO05D002685 1.3e-07 60.1 87 36.8
MELO3C015824.2 Cucumis melo HOM05D002943 ORTHO05D002685 1.3e-07 60.1 46 60.9
CSS0014373 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 2.9e-07 58.9 113 27.4
CSS0045917 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 2.9e-07 58.9 113 27.4
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 3.8e-07 58.5 113 27.4
AagrBONN_evm.TU.Sc2ySwM_252.1 Anthoceros agrestis HOM05D009278 ORTHO05D002685 5.0e-07 58.2 67 73.1
AagrBONN_evm.TU.Sc2ySwM_252.3 Anthoceros agrestis HOM05D009278 ORTHO05D002685 5.0e-07 58.2 67 74.6
AagrBONN_evm.TU.Sc2ySwM_253.1 Anthoceros agrestis HOM05D009278 ORTHO05D002685 5.0e-07 58.2 67 73.1
AagrBONN_evm.TU.Sc2ySwM_260.3 Anthoceros agrestis HOM05D009278 ORTHO05D002685 5.0e-07 58.2 67 74.6
AagrBONN_evm.TU.Sc2ySwM_261.1 Anthoceros agrestis HOM05D009278 ORTHO05D002685 5.0e-07 58.2 67 74.6
AagrBONN_evm.TU.Sc2ySwM_286.1 Anthoceros agrestis HOM05D009278 ORTHO05D002685 5.0e-07 58.2 67 74.6
AagrBONN_evm.TU.Sc2ySwM_286.2 Anthoceros agrestis HOM05D009278 ORTHO05D002685 5.0e-07 58.2 67 73.1
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 5.0e-07 58.2 113 26.5
Peaxi162Scf00939g00121 Petunia axillaris HOM05D002943 ORTHO05D002685 5.0e-07 58.2 44 61.4
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 6.5e-07 57.8 115 23.5
PSO170G2848 Papaver somniferum HOM05D002634 ORTHO05D003100 6.5e-07 57.8 112 27.7
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 6.5e-07 57.8 111 27.0
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 8.5e-07 57.4 113 26.5
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 8.5e-07 57.4 112 26.8
AagrBONN_evm.TU.Sc2ySwM_259.1 Anthoceros agrestis HOM05D009278 ORTHO05D002685 1.1e-06 57.0 68 38.2
AagrBONN_evm.TU.Sc2ySwM_295.9 Anthoceros agrestis HOM05D009278 ORTHO05D002685 1.1e-06 57.0 161 39.8
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 1.1e-06 57.0 113 27.4
Glyma.17G165702 Glycine max HOM05D002634 ORTHO05D003100 1.1e-06 57.0 113 26.5
Solyc04g078320.4 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.1e-06 57.0 113 27.4
Sopen04g031910 Solanum pennellii HOM05D002634 ORTHO05D003100 1.1e-06 57.0 113 27.4
Psat4g083960 Pisum sativum HOM05D002634 ORTHO05D003100 1.4e-06 56.6 112 26.8
BraA06t24894Z Brassica rapa HOM05D002943 ORTHO05D002685 1.9e-06 56.2 70 41.4
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 2.5e-06 55.8 113 26.5
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 2.5e-06 55.8 115 23.5
Cre12.g527500 Chlamydomonas reinhardtii HOM05D002634 ORTHO05D003100 3.2e-06 55.5 112 26.8
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 3.2e-06 55.5 112 25.9
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 4.2e-06 55.1 112 25.9
MCO09G498 Micromonas commoda HOM05D009278 ORTHO05D002685 4.2e-06 55.1 44 47.7
Nn5g30448 Nelumbo nucifera HOM05D002634 ORTHO05D003100 4.2e-06 55.1 112 25.9
Glyma.06G043800 Glycine max HOM05D002634 ORTHO05D003100 5.5e-06 54.7 112 25.9
QL01p022252 Quercus lobata HOM05D002634 ORTHO05D003100 5.5e-06 54.7 113 25.7
AagrBONN_evm.TU.Sc2ySwM_292.1 Anthoceros agrestis HOM05D009278 ORTHO05D002685 7.2e-06 54.3 67 73.1
Manes.12G109000 Manihot esculenta HOM05D002634 ORTHO05D003100 7.2e-06 54.3 113 25.7
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 7.2e-06 54.3 111 43.2
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 9.4e-06 53.9 118 28.0
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 9.4e-06 53.9 118 27.1
DCAR_012802 Daucus carota HOM05D002634 ORTHO05D003100 9.4e-06 53.9 113 25.7
TAR629G3468 Trochodendron aralioides HOM05D002943 ORTHO05D002685 9.4e-06 53.9 33 66.7


User provided reference genes

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