Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09300 Sequoiadendron giganteum HOM05D006623 ORTHO05D008102 3.4e-42 174.5 83 100.0
ATR0706G205 Amborella trichopoda HOM05D006623 ORTHO05D008102 4.8e-12 74.3 67 52.2
Mapoly0025s0135 Marchantia polymorpha HOM05D006623 ORTHO05D008102 1.4e-11 72.8 58 51.7
Pp3c21_14480 Physcomitrium patens HOM05D006623 ORTHO05D008102 1.8e-11 72.4 50 60.0
SMO367G1184 Selaginella moellendorffii HOM05D006623 ORTHO05D008102 7.7e-10 67.0 50 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2701 Anthoceros agrestis HOM05D000001 ORTHO05D008102 6.5e-09 63.9 50 50.0
Hund07141 Selenicereus undatus HOM05D006623 ORTHO05D008102 8.5e-09 63.5 60 50.0
COL.COLO4_04154 Corchorus olitorius HOM05D006623 ORTHO05D008102 1.1e-08 63.2 50 52.0
MELO3C004192.2 Cucumis melo HOM05D006623 ORTHO05D008102 1.1e-08 63.2 39 64.1
CsaV3_2G007010 Cucumis sativus L. HOM05D006623 ORTHO05D008102 1.1e-08 63.2 51 54.9
SHI18063 Sapria himalayana HOM05D006623 ORTHO05D008102 1.1e-08 63.2 60 46.7
Solyc01g100400.3 Solanum lycopersicum HOM05D006623 ORTHO05D008102 1.1e-08 63.2 60 45.0
Sopen01g043920 Solanum pennellii HOM05D006623 ORTHO05D008102 1.1e-08 63.2 60 45.0
PGSC0003DMG400002774 Solanum tuberosum HOM05D006623 ORTHO05D008102 1.1e-08 63.2 60 45.0
Aqoxy1G01536 Aquilegia oxysepala HOM05D006623 ORTHO05D008102 1.5e-08 62.8 43 60.5
CiPaw.07G029000 Carya illinoinensis HOM05D006623 ORTHO05D008102 1.5e-08 62.8 66 45.5
Thhalv10023586m.g Eutrema salsugineum HOM05D006623 ORTHO05D008102 1.5e-08 62.8 38 63.2
Lalb_Chr02g0147841 Lupinus albus HOM05D006623 ORTHO05D008102 1.5e-08 62.8 38 68.4
MD12G1206400 Malus domestica HOM05D006623 ORTHO05D008102 1.5e-08 62.8 47 53.2
Nitab4.5_0003512g0100 Nicotiana tabacum HOM05D006623 ORTHO05D008102 1.5e-08 62.8 66 45.5
Oeu041540.1 Olea europaea HOM05D006623 ORTHO05D008102 1.5e-08 62.8 60 40.0
Sabra13G0007900 Salix brachista HOM05D006623 ORTHO05D008102 1.5e-08 62.8 63 46.0
Cc02_g34940 Coffea canephora HOM05D006623 ORTHO05D008102 1.9e-08 62.4 62 45.2
Nitab4.5_0011526g0010 Nicotiana tabacum HOM05D006623 ORTHO05D008102 1.9e-08 62.4 59 47.5
vmacro19792 Vaccinium macrocarpon HOM05D006623 ORTHO05D008102 1.9e-08 62.4 39 64.1
Rhsim05G0132300 Rhododendron simsii HOM05D006623 ORTHO05D008102 2.5e-08 62.0 39 66.7
ClCG02G014990 Citrullus lanatus HOM05D006623 ORTHO05D008102 3.2e-08 61.6 39 64.1
SalBow7G0710 Salvia bowleyana HOM05D006623 ORTHO05D008102 4.2e-08 61.2 60 46.7
Sc16g0009010 Simmondsia chinensis HOM05D006623 ORTHO05D008102 4.2e-08 61.2 39 64.1
THA.LOC104820665 Tarenaya hassleriana HOM05D006623 ORTHO05D008102 4.2e-08 61.2 43 60.5
Actinidia01513 Actinidia chinensis HOM05D006623 ORTHO05D008102 5.5e-08 60.8 62 46.8
BcaC06g31770 Brassica carinata HOM05D006623 ORTHO05D008102 5.5e-08 60.8 38 63.2
CAN.G1715.8 Capsicum annuum HOM05D006623 ORTHO05D008102 5.5e-08 60.8 38 63.2
Sp2g06490 Schrenkiella parvula HOM05D006623 ORTHO05D008102 5.5e-08 60.8 38 63.2
CSS0040730 Camellia sinensis var. sinensis HOM05D006623 ORTHO05D008102 7.2e-08 60.5 39 64.1
Cfa006696 Carpinus fangiana HOM05D006623 ORTHO05D008102 7.2e-08 60.5 59 45.8
FvH4_6g07380 Fragaria vesca HOM05D006623 ORTHO05D008102 7.2e-08 60.5 38 60.5
FAN02G4416 Fragaria x ananassa HOM05D006623 ORTHO05D008102 7.2e-08 60.5 38 60.5
FAN05G4235 Fragaria x ananassa HOM05D006623 ORTHO05D008102 7.2e-08 60.5 38 60.5
FAN09G0918 Fragaria x ananassa HOM05D006623 ORTHO05D008102 7.2e-08 60.5 38 60.5
Aa31LG2G11510 Aethionema arabicum HOM05D006623 ORTHO05D008102 9.4e-08 60.1 38 57.9
EL10Ac4g09820 Beta vulgaris HOM05D006623 ORTHO05D008102 9.4e-08 60.1 39 61.5
BcaC02g10735 Brassica carinata HOM05D006623 ORTHO05D008102 9.4e-08 60.1 38 63.2
C04p27160 Brassica napus HOM05D006623 ORTHO05D008102 9.4e-08 60.1 38 63.2
BolC4t24074H Brassica oleracea HOM05D006623 ORTHO05D008102 9.4e-08 60.1 38 63.2
Haze_04070 Corylus avellana HOM05D006623 ORTHO05D008102 9.4e-08 60.1 59 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2895 Anthoceros agrestis HOM05D006623 ORTHO05D008102 1.2e-07 59.7 47 48.9
Eucgr.L00270 Eucalyptus grandis HOM05D006623 ORTHO05D008102 1.2e-07 59.7 60 40.0
PSO170G4056 Papaver somniferum HOM05D006623 ORTHO05D008102 1.2e-07 59.7 45 51.1
A03p66650 Brassica napus HOM05D006623 ORTHO05D008102 1.6e-07 59.3 38 57.9
BraA03t15723Z Brassica rapa HOM05D006623 ORTHO05D008102 1.6e-07 59.3 38 57.9
Dinv30881 Davidia involucrata HOM05D006623 ORTHO05D008102 1.6e-07 59.3 39 59.0
Nitab4.5_0000368g0170 Nicotiana tabacum HOM05D006623 ORTHO05D008102 1.6e-07 59.3 35 68.6
PSO357G0307 Papaver somniferum HOM05D006623 ORTHO05D008102 1.6e-07 59.3 45 51.1
Potri.013G009300 Populus trichocarpa HOM05D006623 ORTHO05D008102 1.6e-07 59.3 36 63.9
AUR62000672 Chenopodium quinoa HOM05D006623 ORTHO05D008102 2.1e-07 58.9 39 59.0
AUR62005281 Chenopodium quinoa HOM05D006623 ORTHO05D008102 2.1e-07 58.9 39 59.0
Lju926P10T13 Lonicera japonica HOM05D006623 ORTHO05D008102 2.1e-07 58.9 36 58.3
Manes.09G176400 Manihot esculenta HOM05D006623 ORTHO05D008102 2.1e-07 58.9 61 44.3
Pp3c22_15420 Physcomitrium patens HOM05D006623 ORTHO05D008102 2.1e-07 58.9 50 48.0
RcHm_v2.0_Chr3g0456981 Rosa chinensis HOM05D006623 ORTHO05D008102 2.7e-07 58.5 39 56.4
Cpa.g.sc48.154 Carica papaya HOM05D006623 ORTHO05D008102 3.6e-07 58.2 49 49.0
ECA236G3720 Erigeron canadensis HOM05D006623 ORTHO05D008102 3.6e-07 58.2 39 56.4
Prupe.6G313700 Prunus persica HOM05D006623 ORTHO05D008102 3.6e-07 58.2 39 56.4
Thecc.05G322000 Theobroma cacao HOM05D006623 ORTHO05D008102 3.6e-07 58.2 38 60.5
TAR362G0438 Trochodendron aralioides HOM05D006623 ORTHO05D008102 3.6e-07 58.2 43 55.8
FAN14G0013 Fragaria x ananassa HOM05D000518 ORTHO05D000737 4.7e-07 57.8 38 57.9
Lsat_1_v5_gn_7_74540 Lactuca sativa HOM05D006623 ORTHO05D008102 4.7e-07 57.8 39 53.8
Ah.06g188850 Amaranthus hybridus HOM05D006623 ORTHO05D008102 6.1e-07 57.4 39 56.4
DCAR_005418 Daucus carota HOM05D006623 ORTHO05D008102 6.1e-07 57.4 39 59.0
CARHR055360 Cardamine hirsuta HOM05D006623 ORTHO05D008102 8.0e-07 57.0 38 57.9
Ciclev10001637m.g Citrus clementina HOM05D006623 ORTHO05D008102 8.0e-07 57.0 46 45.7
Migut.B00980 Erythranthe guttata HOM05D006623 ORTHO05D008102 8.0e-07 57.0 60 45.0
Gohir.A08G206200 Gossypium hirsutum HOM05D006623 ORTHO05D008102 8.0e-07 57.0 38 55.3
Gorai.004G236900 Gossypium raimondii HOM05D006623 ORTHO05D008102 8.0e-07 57.0 38 55.3
arahy.Tifrunner.gnm1.ann1.CF3I4Q Arachis hypogaea HOM05D006623 ORTHO05D008102 1.0e-06 56.6 36 61.1
arahy.Tifrunner.gnm1.ann1.WHE5ZB Arachis hypogaea HOM05D006623 ORTHO05D008102 1.0e-06 56.6 36 61.1
unitig_37.g12622 Utricularia gibba HOM05D006623 ORTHO05D008102 1.4e-06 56.2 59 44.1
vmacro19739 Vaccinium macrocarpon HOM05D006623 ORTHO05D008102 1.4e-06 56.2 32 65.6
CSS0001336 Camellia sinensis var. sinensis HOM05D006623 ORTHO05D008102 1.8e-06 55.8 39 61.5
Duzib177G0147 Durio zibethinus HOM05D006623 ORTHO05D008102 1.8e-06 55.8 35 54.3
MSTRG.20386 Avicennia marina HOM05D006623 ORTHO05D008102 2.3e-06 55.5 35 54.3
AT1G56345 Arabidopsis thaliana HOM05D006623 ORTHO05D008102 3.0e-06 55.1 38 57.9
SGA_v2.0_scaffold53G19299 Striga asiatica HOM05D006623 ORTHO05D008102 3.0e-06 55.1 36 55.6
Nn3g21680 Nelumbo nucifera HOM05D006623 ORTHO05D008102 4.0e-06 54.7 46 50.0
AL1G65970 Arabidopsis lyrata HOM05D006623 ORTHO05D008102 6.8e-06 53.9 38 55.3
HanXRQChr11g0347231 Helianthus annuus HOM05D006623 ORTHO05D008102 6.8e-06 53.9 36 52.8
Psat6g152160 Pisum sativum HOM05D006623 ORTHO05D008102 8.8e-06 53.5 40 52.5


User provided reference genes

Program Settings