Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 0.0e+00 1372.5 693 100.0
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 3.3e-223 778.9 695 59.0
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 1.3e-222 776.9 695 58.0
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 5.9e-220 768.1 696 57.3
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 1.3e-219 766.9 696 57.3
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 2.9e-219 765.8 696 57.3
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 7.2e-218 761.1 697 58.1
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 1.6e-217 760.0 700 57.4
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 4.7e-217 758.4 701 56.9
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 6.1e-217 758.1 695 57.1
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 7.9e-217 757.7 701 56.9
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 7.9e-217 757.7 698 58.2
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 7.9e-217 757.7 697 58.1
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 7.9e-217 757.7 695 57.1
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 7.9e-217 757.7 698 57.7
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 3.0e-216 755.7 696 57.2
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 3.0e-216 755.7 695 57.4
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 6.7e-216 754.6 696 57.6
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.1e-215 753.8 701 56.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 7.4e-215 751.1 696 57.6
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 9.7e-215 750.7 698 56.6
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 1.7e-214 750.0 696 57.0
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.2e-214 749.6 698 56.7
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 6.3e-214 748.0 698 56.7
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 8.2e-214 747.7 698 56.4
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 1.4e-213 746.9 695 56.5
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 1.8e-213 746.5 696 55.6
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 2.4e-213 746.1 706 56.7
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 7.0e-213 744.6 704 55.8
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.5e-212 743.4 693 56.0
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 3.5e-212 742.3 696 55.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 5.9e-212 741.5 695 55.8
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 7.7e-212 741.1 715 56.4
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 7.7e-212 741.1 715 56.4
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 7.7e-212 741.1 696 56.3
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 2.2e-211 739.6 696 56.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 2.2e-211 739.6 694 55.8
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 8.5e-211 737.6 696 55.7
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 8.5e-211 737.6 703 55.0
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 1.9e-210 736.5 694 56.8
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 1.9e-210 736.5 695 56.5
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 1.9e-210 736.5 696 55.9
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 3.2e-210 735.7 700 55.9
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 4.2e-210 735.3 701 56.3
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 7.2e-210 734.6 700 56.1
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 1.2e-209 733.8 696 55.3
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 2.1e-209 733.0 699 55.8
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 3.6e-209 732.3 681 57.1
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 4.7e-209 731.9 692 56.1
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 1.8e-208 729.9 703 55.0
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 5.2e-208 728.4 701 55.5
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 8.8e-208 727.6 695 55.4
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 1.1e-207 727.2 702 53.8
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.1e-207 727.2 697 55.8
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 1.5e-207 726.9 702 55.1
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 2.2e-206 723.0 702 53.6
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 3.7e-206 722.2 698 55.3
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 8.2e-206 721.1 696 54.5
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-205 720.7 698 55.2
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.4e-205 720.3 701 55.1
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 9.1e-205 717.6 694 55.3
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 5.9e-204 714.9 695 54.1
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 7.7e-204 714.5 700 54.6
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 1.7e-203 713.4 698 54.4
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 2.2e-203 713.0 694 54.5
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 3.8e-203 712.2 695 54.5
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 1.1e-202 710.7 758 52.2
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 1.5e-202 710.3 702 54.0
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 3.2e-202 709.1 694 53.6
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 1.6e-201 706.8 698 54.9
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.0e-200 704.1 797 50.6
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 1.4e-200 703.7 696 55.2
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 2.3e-200 703.0 699 54.2
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 4.0e-200 702.2 701 53.8
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 4.0e-200 702.2 702 54.0
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 6.7e-200 701.4 692 54.9
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 8.8e-200 701.0 699 54.1
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 1.3e-198 697.2 695 54.5
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 8.3e-198 694.5 704 52.4
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 8.3e-198 694.5 695 54.5
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 2.4e-197 693.0 696 55.6
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 2.4e-197 693.0 698 52.6
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 3.1e-197 692.6 684 54.7
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 1.2e-196 690.6 697 53.1
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 1.2e-196 690.6 699 52.6
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 5.9e-196 688.3 744 52.0
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 2.5e-194 682.9 693 55.3
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 9.1e-189 664.5 893 44.0
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.0e-184 651.0 705 50.8
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 3.0e-184 649.4 695 50.4
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.4e-181 639.8 706 50.8
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 3.5e-180 636.0 612 55.2
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 1.6e-177 627.1 698 48.9
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 2.7e-156 556.6 642 48.3
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 6.2e-153 545.4 478 59.2
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 1.4e-149 534.3 490 57.8
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 2.1e-145 520.4 480 56.2
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 2.4e-144 516.9 605 48.9
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 4.0e-144 516.2 441 58.7
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 4.9e-134 482.6 413 61.3
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.3e-130 469.9 419 58.7
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 4.6e-124 449.5 439 54.7
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.8e-120 437.6 615 43.6
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 2.6e-119 433.7 423 53.9
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.3e-81 308.5 332 52.1
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.5e-74 285.0 140 100.0
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.3e-65 255.4 505 33.5
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 3.4e-58 230.7 295 44.4
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 2.4e-56 224.6 284 45.1
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.0e-54 219.2 261 49.0
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.5e-45 188.7 223 46.2
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.5e-42 178.7 145 60.0
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.1e-40 172.6 219 47.0
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 8.6e-38 162.9 149 56.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.1e-35 156.0 145 55.9
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 2.0e-34 151.8 184 51.1
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 4.4e-34 150.6 172 48.3
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 5.1e-30 137.1 109 62.4
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.6e-28 132.1 149 49.0
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 8.1e-28 129.8 149 49.0
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 2.6e-26 124.8 106 60.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 7.6e-26 123.2 85 63.5
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 3.2e-24 117.9 96 60.4
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.8e-19 102.1 73 63.0
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 3.1e-19 101.3 73 63.0
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 4.0e-19 100.9 73 61.6
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.2e-18 99.4 100 45.0
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 2.0e-18 98.6 100 48.0
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 2.6e-18 98.2 83 55.4
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 1.7e-17 95.5 71 57.7
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.7e-17 95.5 71 57.7
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 2.2e-17 95.1 88 50.0
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 2.9e-17 94.7 71 56.3
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 2.9e-17 94.7 100 50.0
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 6.4e-17 93.6 79 54.4
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 4.2e-16 90.9 77 59.7
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 5.5e-16 90.5 73 56.2
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 3.5e-15 87.8 73 56.2
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 6.0e-15 87.0 62 66.1
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.5e-13 82.4 73 54.8
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.9e-13 82.0 53 73.6
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 3.3e-13 81.3 80 48.8
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 7.4e-13 80.1 72 55.6
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 7.4e-13 80.1 47 80.9
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 9.6e-13 79.7 72 52.8
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.3e-09 69.3 44 75.0
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.4e-08 65.9 51 64.7
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 3.2e-08 64.7 48 58.3
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 4.2e-08 64.3 55 60.0
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 4.2e-08 64.3 41 70.7
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 5.5e-08 63.9 48 58.3
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 3.5e-07 61.2 75 45.3
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 3.0e-06 58.2 36 75.0


User provided reference genes

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