Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07940 Sequoiadendron giganteum HOM05D001900 ORTHO05D003003 2.2e-48 195.3 98 100.0
vmacro07653 Vaccinium macrocarpon HOM05D001900 ORTHO05D003003 6.3e-19 97.4 61 68.9
Ciclev10020854m.g Citrus clementina HOM05D001900 ORTHO05D003003 5.3e-18 94.4 48 81.2
Lalb_Chr02g0157371 Lupinus albus HOM05D001900 ORTHO05D003003 5.3e-18 94.4 48 81.2
MBI01_g21128_MAGBIO Magnolia biondii HOM05D001900 ORTHO05D003003 7.0e-18 94.0 48 81.2
CSS0031386 Camellia sinensis var. sinensis HOM05D001900 ORTHO05D003003 1.2e-17 93.2 48 79.2
CiPaw.09G166800 Carya illinoinensis HOM05D001900 ORTHO05D003003 2.0e-17 92.4 48 79.2
Duzib177G0529 Durio zibethinus HOM05D001900 ORTHO05D003003 2.0e-17 92.4 48 83.3
FAN24G2872 Fragaria x ananassa HOM05D001900 ORTHO05D046091 2.0e-17 92.4 51 72.5
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 2.6e-17 92.0 50 74.0
Lj1A1072T25 Lonicera japonica HOM05D001900 ORTHO05D003003 2.6e-17 92.0 48 77.1
Cpa.g.sc161.34 Carica papaya HOM05D001900 ORTHO05D003003 3.5e-17 91.7 48 83.3
FAN15G0949 Fragaria x ananassa HOM05D001900 ORTHO05D003003 3.5e-17 91.7 49 75.5
arahy.Tifrunner.gnm1.ann1.EEI187 Arachis hypogaea HOM05D001900 ORTHO05D003003 4.5e-17 91.3 48 79.2
arahy.Tifrunner.gnm1.ann1.FX2G1C Arachis hypogaea HOM05D001900 ORTHO05D003003 4.5e-17 91.3 48 79.2
Prupe.7G013300 Prunus persica HOM05D001900 ORTHO05D003003 4.5e-17 91.3 48 81.2
Rhsim03G0049600 Rhododendron simsii HOM05D001900 ORTHO05D003003 5.9e-17 90.9 48 77.1
Ca_11698_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 7.7e-17 90.5 48 79.2
Ca_25350_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 7.7e-17 90.5 48 79.2
Medtr6g027590 Medicago truncatula HOM05D001900 ORTHO05D003003 7.7e-17 90.5 48 79.2
Medtr6g471010 Medicago truncatula HOM05D001900 ORTHO05D003003 7.7e-17 90.5 48 79.2
Psat1g091400 Pisum sativum HOM05D001900 ORTHO05D003003 7.7e-17 90.5 48 79.2
TPR.G25364 Trifolium pratense HOM05D001900 ORTHO05D003003 7.7e-17 90.5 48 79.2
Actinidia37818 Actinidia chinensis HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 77.1
COL.COLO4_28637 Corchorus olitorius HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 81.2
Haze_20410 Corylus avellana HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 75.0
Dinv25044 Davidia involucrata HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 77.1
Duzib128G0536 Durio zibethinus HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 81.2
Gohir.A11G229200 Gossypium hirsutum HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 81.2
Gohir.D11G241300 Gossypium hirsutum HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 81.2
Gorai.007G255400 Gossypium raimondii HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 81.2
MD12G1011300 Malus domestica HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 79.2
Prupe.1G194700 Prunus persica HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 79.2
QL07p018995 Quercus lobata HOM05D001900 ORTHO05D003003 1.0e-16 90.1 48 77.1
CDE07G1554 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 79.2
FvH4_2g04970 Fragaria vesca HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 75.0
FvH4_7g02410 Fragaria vesca HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 75.0
FvH4_7g06980 Fragaria vesca HOM05D001900 ORTHO05D046091 1.3e-16 89.7 48 75.0
FAN02G2150 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 75.0
FAN15G0323 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 75.0
FAN20G1512 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 75.0
FAN24G3538 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 75.0
MD04G1041000 Malus domestica HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 77.1
MD04G1041300 Malus domestica HOM05D001900 ORTHO05D003003 1.3e-16 89.7 48 77.1
Cfa017715 Carpinus fangiana HOM05D001900 ORTHO05D003003 1.7e-16 89.4 48 75.0
RcHm_v2.0_Chr3g0496081 Rosa chinensis HOM05D001900 ORTHO05D003003 1.7e-16 89.4 48 77.1
GSVIVG01022436001 Vitis vinifera HOM05D001900 ORTHO05D003003 1.7e-16 89.4 48 75.0
Gohir.A13G163700 Gossypium hirsutum HOM05D001900 ORTHO05D003003 2.2e-16 89.0 48 79.2
Gohir.D13G166600 Gossypium hirsutum HOM05D001900 ORTHO05D003003 2.2e-16 89.0 48 79.2
Gorai.013G195900 Gossypium raimondii HOM05D001900 ORTHO05D003003 2.2e-16 89.0 48 79.2
TAR623G1140 Trochodendron aralioides HOM05D001900 ORTHO05D003003 2.2e-16 89.0 48 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2372 Anthoceros agrestis HOM05D001900 ORTHO05D003003 2.9e-16 88.6 49 75.5
HanXRQChr07g0196281 Helianthus annuus HOM05D001900 ORTHO05D003003 2.9e-16 88.6 48 77.1
SalBow6G4052 Salvia bowleyana HOM05D001900 ORTHO05D003003 2.9e-16 88.6 48 75.0
SalBow6G6368 Salvia bowleyana HOM05D001900 ORTHO05D003003 2.9e-16 88.6 48 75.0
Solyc01g020440.3 Solanum lycopersicum HOM05D001900 ORTHO05D003003 2.9e-16 88.6 48 77.1
AT5G27740 Arabidopsis thaliana HOM05D001900 ORTHO05D003003 3.8e-16 88.2 48 79.2
BcaB04g19686 Brassica carinata HOM05D001900 ORTHO05D003003 3.8e-16 88.2 51 74.5
AUR62038453 Chenopodium quinoa HOM05D001900 ORTHO05D003003 3.8e-16 88.2 48 72.9
AUR62042150 Chenopodium quinoa HOM05D001900 ORTHO05D003003 3.8e-16 88.2 48 72.9
Cc06_g21450 Coffea canephora HOM05D001900 ORTHO05D003003 3.8e-16 88.2 48 75.0
Thhalv10004490m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 3.8e-16 88.2 48 79.2
Sopen01g015760 Solanum pennellii HOM05D001900 ORTHO05D003003 3.8e-16 88.2 48 75.0
Thecc.05G242500 Theobroma cacao HOM05D001900 ORTHO05D003003 3.8e-16 88.2 49 77.6
Zm00001eb060330 Zea mays HOM05D001900 ORTHO05D003003 3.8e-16 88.2 48 77.1
Zm00001eb213170 Zea mays HOM05D001900 ORTHO05D003003 3.8e-16 88.2 48 77.1
Glyma.05G089100 Glycine max HOM05D001900 ORTHO05D003003 5.0e-16 87.8 48 79.2
Sc22g0003180 Simmondsia chinensis HOM05D001900 ORTHO05D003003 5.0e-16 87.8 48 77.1
HPP92_015892 Vanilla planifolia HOM05D001900 ORTHO05D003003 5.0e-16 87.8 48 75.0
ECA238G2580 Erigeron canadensis HOM05D001900 ORTHO05D003003 6.5e-16 87.4 48 75.0
Psat1g030560 Pisum sativum HOM05D001900 ORTHO05D003003 6.5e-16 87.4 48 77.1
Potri.019G040000 Populus trichocarpa HOM05D001900 ORTHO05D003003 6.5e-16 87.4 48 79.2
AL6G39200 Arabidopsis lyrata HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
A02p38740 Brassica napus HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
BraA02t08851Z Brassica rapa HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
BraA06t26658Z Brassica rapa HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
Carub.0006s2482 Capsella rubella HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
CARHR186260 Cardamine hirsuta HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
CDE06G2247 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 8.5e-16 87.0 49 75.5
Sp2g20910 Schrenkiella parvula HOM05D001900 ORTHO05D003003 8.5e-16 87.0 48 77.1
MELO3C008864.2 Cucumis melo HOM05D001900 ORTHO05D003003 1.1e-15 86.7 48 70.8
DCAR_013487 Daucus carota HOM05D001900 ORTHO05D003003 1.1e-15 86.7 48 77.1
Manes.08G153200 Manihot esculenta HOM05D001900 ORTHO05D003003 1.1e-15 86.7 47 80.9
Peaxi162Scf00258g00523 Petunia axillaris HOM05D001900 ORTHO05D003003 1.1e-15 86.7 48 77.1
Sabra19G0050300 Salix brachista HOM05D001900 ORTHO05D003003 1.1e-15 86.7 48 79.2
VMungo0464G0076 Vigna mungo HOM05D001900 ORTHO05D003003 1.1e-15 86.7 48 75.0
BcaB07g34200 Brassica carinata HOM05D001900 ORTHO05D003003 1.5e-15 86.3 48 77.1
Phvul.004G076500 Phaseolus vulgaris HOM05D001900 ORTHO05D003003 1.5e-15 86.3 47 76.6
PGR042G3124 Punica granatum HOM05D001900 ORTHO05D003003 1.5e-15 86.3 48 77.1
TWI32G1012 Tripterygium wilfordii HOM05D001900 ORTHO05D003003 1.5e-15 86.3 48 75.0
MSTRG.6253 Avicennia marina HOM05D001900 ORTHO05D003003 1.9e-15 85.9 48 70.8
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.9e-15 85.9 48 75.0
BolC2t11892H Brassica oleracea HOM05D001900 ORTHO05D003003 1.9e-15 85.9 48 75.0
CAN.G959.51 Capsicum annuum HOM05D001900 ORTHO05D003003 1.9e-15 85.9 48 75.0
Eucgr.A02138 Eucalyptus grandis HOM05D001900 ORTHO05D003003 1.9e-15 85.9 47 78.7
FAN14G2403 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.9e-15 85.9 48 72.9
Lj2g0025638 Lotus japonicus HOM05D001900 ORTHO05D003003 1.9e-15 85.9 48 75.0
PSO339G1619 Papaver somniferum HOM05D001900 ORTHO05D003003 1.9e-15 85.9 48 72.9
CBR_g29296 Chara braunii HOM05D001900 ORTHO05D003003 2.5e-15 85.5 48 72.9
CsaV3_4G031600 Cucumis sativus L. HOM05D001900 ORTHO05D003003 2.5e-15 85.5 48 68.8
Nitab4.5_0000121g0030 Nicotiana tabacum HOM05D001900 ORTHO05D003003 2.5e-15 85.5 48 75.0
Solyc01g020220.3 Solanum lycopersicum HOM05D001900 ORTHO05D003003 2.5e-15 85.5 48 75.0
Sopen01g010500 Solanum pennellii HOM05D001900 ORTHO05D003003 2.5e-15 85.5 48 75.0
Sopen01g014330 Solanum pennellii HOM05D001900 ORTHO05D003003 2.5e-15 85.5 48 75.0
Aa31LG11G9510 Aethionema arabicum HOM05D001900 ORTHO05D003003 3.2e-15 85.1 48 72.9
CANSAT54G0333 Cannabis sativa HOM05D001900 ORTHO05D003003 3.2e-15 85.1 48 72.9
Mapoly0170s0033 Marchantia polymorpha HOM05D001900 ORTHO05D003003 3.2e-15 85.1 48 70.8
Os03g0792600 Oryza sativa ssp. japonica HOM05D001900 ORTHO05D003003 3.2e-15 85.1 48 70.8
Lsat_1_v5_gn_2_103681 Lactuca sativa HOM05D001900 ORTHO05D003003 4.2e-15 84.7 48 72.9
Pp3c25_5630 Physcomitrium patens HOM05D001900 ORTHO05D003003 4.2e-15 84.7 48 70.8
BcaC03g17801 Brassica carinata HOM05D001900 ORTHO05D003003 5.5e-15 84.3 48 72.9
Migut.J01540 Erythranthe guttata HOM05D001900 ORTHO05D003003 5.5e-15 84.3 48 72.9
FAN07G0041 Fragaria x ananassa HOM05D001900 ORTHO05D003003 5.5e-15 84.3 51 70.6
Nn2g14554 Nelumbo nucifera HOM05D001900 ORTHO05D003003 5.5e-15 84.3 47 74.5
unitig_21.g20661 Utricularia gibba HOM05D001900 ORTHO05D003003 5.5e-15 84.3 48 72.9
ATR0697G074 Amborella trichopoda HOM05D001900 ORTHO05D003003 7.2e-15 84.0 48 72.9
EL10Ac5g11694 Beta vulgaris HOM05D001900 ORTHO05D003003 7.2e-15 84.0 48 68.8
BolC7t44638H Brassica oleracea HOM05D001900 ORTHO05D003003 9.4e-15 83.6 48 75.0
Sed0019827 Sechium edule HOM05D001900 ORTHO05D003003 9.4e-15 83.6 48 68.8
HanXRQChr14g0453631 Helianthus annuus HOM05D001900 ORTHO05D003003 1.2e-14 83.2 48 75.0
Nitab4.5_0002915g0020 Nicotiana tabacum HOM05D001900 ORTHO05D003003 1.2e-14 83.2 48 72.9
SGA_v2.0_scaffold66G22376 Striga asiatica HOM05D001900 ORTHO05D003003 1.2e-14 83.2 48 70.8
Nitab4.5_0009998g0010 Nicotiana tabacum HOM05D001900 ORTHO05D003003 1.6e-14 82.8 48 72.9
Oeu052789.1 Olea europaea HOM05D001900 ORTHO05D003003 1.6e-14 82.8 48 72.9
Aqoxy2G00581 Aquilegia oxysepala HOM05D001900 ORTHO05D003003 2.7e-14 82.0 48 66.7
PSO384G1286 Papaver somniferum HOM05D001900 ORTHO05D003003 2.7e-14 82.0 48 70.8
HanXRQChr14g0433601 Helianthus annuus HOM05D001900 ORTHO05D003003 8.0e-14 80.5 48 70.8
SMO271G0133 Selaginella moellendorffii HOM05D001900 ORTHO05D003003 8.0e-14 80.5 50 64.0
Cre16.g679950 Chlamydomonas reinhardtii HOM05D001900 ORTHO05D003003 3.0e-13 78.6 51 64.7
SGA_v2.0_scaffold60G20921 Striga asiatica HOM05D001900 ORTHO05D402831 7.5e-12 73.9 48 66.7
MCO13G013 Micromonas commoda HOM05D001900 ORTHO05D003003 9.8e-12 73.6 48 64.6
PRCOL_00007014 Prasinoderma coloniale HOM05D001900 ORTHO05D003003 2.4e-10 68.9 48 58.3
SGA_v2.0_scaffold69G23218 Striga asiatica HOM05D001900 ORTHO05D003003 5.4e-10 67.8 38 76.3
ClCG04G004690 Citrullus lanatus HOM05D001900 ORTHO05D003003 2.7e-09 65.5 38 68.4
Cfa025645 Carpinus fangiana HOM05D001900 ORTHO05D003003 1.0e-08 63.5 59 49.2
HanXRQChr09g0242001 Helianthus annuus HOM05D001900 ORTHO05D003003 1.7e-08 62.8 37 73.0
CAN.G1352.7 Capsicum annuum HOM05D006174 ORTHO05D007987 1.9e-07 59.3 57 47.4
THA.LOC104824562 Tarenaya hassleriana HOM05D001900 ORTHO05D003003 7.2e-07 57.4 48 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1440 Anthoceros agrestis HOM05D001900 ORTHO05D003003 3.6e-06 55.1 45 53.3
AL1G34850 Arabidopsis lyrata HOM05D001470 ORTHO05D006430 3.6e-06 55.1 45 48.9
AT1G21690 Arabidopsis thaliana HOM05D001470 ORTHO05D006430 3.6e-06 55.1 45 48.9
Carub.0001s2112 Capsella rubella HOM05D001470 ORTHO05D006430 3.6e-06 55.1 45 48.9
Thhalv10005385m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 4.7e-06 54.7 31 77.4
FvH4_2g27570 Fragaria vesca HOM05D001470 ORTHO05D006430 4.7e-06 54.7 45 46.7
FAN15G1662 Fragaria x ananassa HOM05D001470 ORTHO05D006430 4.7e-06 54.7 45 46.7
FAN24G2905 Fragaria x ananassa HOM05D001470 ORTHO05D006430 4.7e-06 54.7 45 46.7
FAN27G2248 Fragaria x ananassa HOM05D001470 ORTHO05D006430 4.7e-06 54.7 45 46.7
FAN20G2509 Fragaria x ananassa HOM05D001470 ORTHO05D006430 6.1e-06 54.3 45 46.7
CDE07G1761 Ceratophyllum demersum HOM05D001470 ORTHO05D006430 8.0e-06 53.9 45 46.7


User provided reference genes

Program Settings