Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 6.5e-111 404.1 203 100.0
SEGI_37052 Sequoiadendron giganteum HOM05D014790 ORTHO05D000589 5.9e-19 98.6 56 85.7
SEGI_34323 Sequoiadendron giganteum HOM05D014790 ORTHO05D026141 5.5e-17 92.0 59 81.4
SEGI_16574 Sequoiadendron giganteum HOM05D014790 ORTHO05D000589 2.7e-16 89.7 59 78.0
SEGI_33611 Sequoiadendron giganteum HOM05D014790 ORTHO05D000589 3.6e-16 89.4 56 78.6
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.4e-15 87.4 70 58.6
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 6.9e-12 75.1 92 44.6
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 9.1e-12 74.7 71 54.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.4e-11 72.8 67 49.3
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.0e-10 71.2 71 52.1
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.7e-10 70.5 75 54.7
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.2e-10 70.1 71 50.7
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.9e-10 69.7 69 52.2
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.9e-10 69.7 69 52.2
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 2.9e-10 69.7 69 46.4
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 2.9e-10 69.7 69 46.4
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.9e-10 69.7 69 46.4
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 2.9e-10 69.7 69 46.4
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 3.8e-10 69.3 71 49.3
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 3.8e-10 69.3 69 56.5
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 3.8e-10 69.3 68 47.1
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 6.5e-10 68.6 69 50.7
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 8.5e-10 68.2 71 49.3
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 8.5e-10 68.2 71 47.9
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.4e-09 67.4 82 46.3
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.4e-09 67.4 71 49.3
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.4e-09 67.4 70 50.0
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.4e-09 67.4 70 50.0
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.4e-09 67.4 69 50.7
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.9e-09 67.0 70 50.0
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.9e-09 67.0 70 47.1
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.9e-09 67.0 71 45.1
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 2.5e-09 66.6 70 48.6
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 3.2e-09 66.2 71 47.9
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 4.2e-09 65.9 70 50.0
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 4.2e-09 65.9 71 47.9
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.2e-09 65.9 68 48.5
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 5.5e-09 65.5 69 50.7
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 7.2e-09 65.1 71 43.7
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 7.2e-09 65.1 71 43.7
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 7.2e-09 65.1 71 47.9
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 7.2e-09 65.1 71 42.3
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 7.2e-09 65.1 71 47.9
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 7.2e-09 65.1 70 47.1
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 7.2e-09 65.1 71 43.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 9.4e-09 64.7 71 45.1
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-08 64.3 75 45.3
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.2e-08 64.3 71 46.5
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.2e-08 64.3 71 46.5
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.2e-08 64.3 71 46.5
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.2e-08 64.3 71 49.3
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.6e-08 63.9 71 46.5
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.6e-08 63.9 74 48.6
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.1e-08 63.5 71 46.5
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.1e-08 63.5 71 47.9
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.1e-08 63.5 71 45.1
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 2.1e-08 63.5 32 100.0
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 2.7e-08 63.2 71 47.9
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.7e-08 63.2 69 47.8
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.7e-08 63.2 70 45.7
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.7e-08 63.2 71 46.5
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 3.6e-08 62.8 77 45.5
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 3.6e-08 62.8 77 45.5
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.6e-08 62.8 71 50.7
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 3.6e-08 62.8 71 43.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 3.6e-08 62.8 72 45.8
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.6e-08 62.8 68 47.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.6e-08 62.8 71 45.1
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 4.7e-08 62.4 95 40.0
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 4.7e-08 62.4 77 44.2
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.7e-08 62.4 71 40.8
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 4.7e-08 62.4 71 40.8
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 4.7e-08 62.4 69 46.4
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 4.7e-08 62.4 69 46.4
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.7e-08 62.4 71 45.1
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 4.7e-08 62.4 69 47.8
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 4.7e-08 62.4 71 43.7
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 6.1e-08 62.0 69 46.4
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.1e-08 62.0 71 49.3
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 6.1e-08 62.0 71 43.7
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 6.1e-08 62.0 71 46.5
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 6.1e-08 62.0 71 45.1
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 6.1e-08 62.0 69 46.4
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 6.1e-08 62.0 71 40.8
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 6.1e-08 62.0 70 42.9
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 6.1e-08 62.0 71 40.8
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 7.9e-08 61.6 71 45.1
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 7.9e-08 61.6 71 42.3
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 7.9e-08 61.6 71 42.3
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 7.9e-08 61.6 71 43.7
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.0e-07 61.2 69 50.7
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.0e-07 61.2 77 45.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.0e-07 61.2 69 46.4
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.4e-07 60.8 69 46.4
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.4e-07 60.8 69 46.4
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.4e-07 60.8 66 51.5
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.4e-07 60.8 83 38.6
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.4e-07 60.8 81 43.2
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.4e-07 60.8 71 47.9
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.8e-07 60.5 71 43.7
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.8e-07 60.5 71 46.5
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 2.3e-07 60.1 72 44.4
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.3e-07 60.1 72 44.4
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.3e-07 60.1 69 44.9
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-07 59.7 71 43.7
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 3.0e-07 59.7 71 46.5
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.9e-07 59.3 68 47.1
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 3.9e-07 59.3 71 45.1
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 5.1e-07 58.9 71 42.3
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 5.1e-07 58.9 71 42.3
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 5.1e-07 58.9 88 40.9
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 5.1e-07 58.9 88 40.9
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 5.1e-07 58.9 68 45.6
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 6.7e-07 58.5 69 43.5
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 6.7e-07 58.5 72 44.4
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 8.8e-07 58.2 69 44.9
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 8.8e-07 58.2 71 42.3
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 8.8e-07 58.2 61 45.9
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.1e-06 57.8 63 46.0
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.1e-06 57.8 71 39.4
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.5e-06 57.4 70 42.9
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.6e-06 56.6 70 42.9
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 2.6e-06 56.6 68 42.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.3e-06 56.2 69 44.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 3.3e-06 56.2 69 43.5
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 4.4e-06 55.8 69 44.9
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 4.4e-06 55.8 69 44.9
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 4.4e-06 55.8 69 44.9
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 5.7e-06 55.5 69 40.6
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.7e-06 55.5 69 40.6
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 5.7e-06 55.5 71 45.1
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 9.7e-06 54.7 75 42.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 9.7e-06 54.7 74 39.2
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 9.7e-06 54.7 66 43.9


User provided reference genes

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