Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 1.0e-76 290.4 196 100.0
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 2.1e-21 106.7 127 73.2
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.8e-20 103.6 124 76.6
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 3.0e-20 102.8 124 76.6
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 3.0e-20 102.8 124 76.6
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 3.9e-20 102.4 133 69.2
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 6.7e-20 101.7 124 75.8
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 8.7e-20 101.3 124 75.0
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 1.1e-19 100.9 124 75.8
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 1.1e-19 100.9 124 75.8
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 1.1e-19 100.9 124 75.8
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.1e-19 100.9 124 75.8
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 2.5e-19 99.8 124 73.4
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 2.5e-19 99.8 124 75.8
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 2.5e-19 99.8 124 75.8
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 3.3e-19 99.4 123 74.8
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 5.7e-19 98.6 124 75.0
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 9.7e-19 97.8 124 72.6
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 1.3e-18 97.4 124 74.2
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 1.3e-18 97.4 124 75.0
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 6.3e-18 95.1 124 72.6
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 6.3e-18 95.1 124 71.8
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 6.3e-18 95.1 129 66.7
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 1.1e-17 94.4 124 71.8
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 1.8e-17 93.6 125 70.4
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 3.1e-17 92.8 124 71.0
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 3.1e-17 92.8 124 71.0
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.1e-17 92.8 125 72.0
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.1e-17 92.8 125 72.0
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 5.3e-17 92.0 124 72.6
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 6.9e-17 91.7 124 70.2
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 6.9e-17 91.7 125 69.6
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 1.2e-16 90.9 124 71.0
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 1.2e-16 90.9 124 69.4
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.5e-16 90.5 125 71.2
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 1.5e-16 90.5 124 70.2
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 2.0e-16 90.1 124 40.3
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 2.6e-16 89.7 139 36.0
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 2.6e-16 89.7 124 71.8
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 3.4e-16 89.4 146 36.3
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 3.4e-16 89.4 124 69.4
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 3.4e-16 89.4 124 69.4
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 3.4e-16 89.4 125 70.4
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 3.4e-16 89.4 125 70.4
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 3.4e-16 89.4 124 70.2
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 3.4e-16 89.4 125 71.2
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 4.5e-16 89.0 124 39.5
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 5.9e-16 88.6 125 67.2
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 7.7e-16 88.2 124 70.2
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 7.7e-16 88.2 124 69.4
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 7.7e-16 88.2 124 71.0
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 1.0e-15 87.8 125 71.2
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.0e-15 87.8 124 71.8
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.0e-15 87.8 124 71.8
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.7e-15 87.0 124 71.8
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.7e-15 87.0 124 71.8
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 1.7e-15 87.0 124 72.6
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 1.7e-15 87.0 124 71.0
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.7e-15 87.0 124 37.1
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 1.7e-15 87.0 124 71.0
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.2e-15 86.7 124 69.4
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.2e-15 86.7 124 69.4
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 2.2e-15 86.7 125 73.6
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 2.2e-15 86.7 124 70.2
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 3.8e-15 85.9 124 70.2
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 3.8e-15 85.9 124 37.9
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 3.8e-15 85.9 124 71.8
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 3.8e-15 85.9 124 71.8
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 5.0e-15 85.5 124 71.8
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 5.0e-15 85.5 124 71.0
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 5.0e-15 85.5 124 70.2
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 8.5e-15 84.7 124 70.2
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 8.5e-15 84.7 124 70.2
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 1.1e-14 84.3 124 71.0
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 1.1e-14 84.3 124 69.4
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 1.1e-14 84.3 124 70.2
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.4e-14 84.0 124 71.0
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 1.9e-14 83.6 124 68.5
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 1.9e-14 83.6 124 70.2
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 2.5e-14 83.2 124 69.4
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 3.2e-14 82.8 123 69.1
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 4.2e-14 82.4 124 71.0
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 9.4e-14 81.3 124 68.5
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 1.6e-13 80.5 124 71.0
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 2.7e-13 79.7 124 66.9
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 3.6e-13 79.3 124 67.7
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 1.4e-12 77.4 124 63.7
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 8.8e-12 74.7 124 66.9
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 8.8e-12 74.7 124 66.9
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 1.5e-11 73.9 173 30.6
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 1.7e-10 70.5 133 51.1
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 6.3e-10 68.6 42 71.4
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 1.4e-09 67.4 42 76.2
QL09p000200 Quercus lobata HOM05D010675 ORTHO05D014145 1.4e-09 67.4 42 66.7
QL05p061710 Quercus lobata HOM05D010675 ORTHO05D014145 2.4e-09 66.6 42 64.3
QL03p000458 Quercus lobata HOM05D010675 ORTHO05D014145 4.1e-09 65.9 42 64.3
QL10p016783 Quercus lobata HOM05D010675 ORTHO05D014145 4.1e-09 65.9 42 64.3
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 6.9e-09 65.1 41 65.9
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 6.9e-09 65.1 41 65.9
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 1.2e-08 64.3 41 65.9
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 1.2e-08 64.3 124 66.1
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 3.4e-08 62.8 41 70.7
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 7.7e-08 61.6 41 63.4
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 1.3e-07 60.8 41 63.4
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.7e-07 60.5 41 68.3
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 2.2e-07 60.1 41 65.9
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 3.8e-07 59.3 40 62.5
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 5.0e-07 58.9 41 63.4
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 8.5e-07 58.2 36 63.9
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 1.1e-06 57.8 41 65.9
CSS0012027 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D014145 1.9e-06 57.0 48 50.0
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 3.2e-06 56.2 41 56.1
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 7.2e-06 55.1 40 57.5
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 7.2e-06 55.1 118 33.9


User provided reference genes

Program Settings