Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 2.7e-270 935.3 664 100.0
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 3.7e-70 270.4 623 37.1
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 1.1e-69 268.9 622 37.8
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 4.5e-68 263.5 624 38.9
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 7.7e-68 262.7 629 36.9
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 1.0e-67 262.3 634 37.2
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.9e-67 260.8 633 49.9
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 5.0e-67 260.0 625 38.7
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 1.9e-66 258.1 625 35.5
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.2e-66 257.3 632 47.5
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 3.2e-66 257.3 619 36.8
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 9.4e-66 255.8 630 38.6
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.1e-65 254.6 631 35.7
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 6.1e-65 253.1 643 36.7
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.4e-64 251.9 642 50.5
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.8e-64 251.5 624 41.0
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 1.8e-64 251.5 629 41.7
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 3.9e-64 250.4 642 50.5
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 3.3e-63 247.3 626 35.5
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 5.7e-63 246.5 629 35.8
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.3e-62 245.4 627 36.4
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.3e-62 245.4 629 34.3
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.7e-62 245.0 625 51.8
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 2.8e-62 244.2 624 36.7
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.7e-62 243.8 621 40.3
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 6.3e-62 243.0 625 38.6
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 8.2e-62 242.7 639 49.5
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.4e-61 241.9 624 37.3
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 3.1e-61 240.7 625 44.8
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 9.1e-61 239.2 632 41.0
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 9.1e-61 239.2 628 37.9
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 1.2e-60 238.8 623 53.8
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 2.0e-60 238.0 659 34.9
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 2.6e-60 237.7 644 39.3
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 2.6e-60 237.7 634 37.5
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 3.5e-60 237.3 625 44.3
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 5.9e-60 236.5 634 37.4
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 7.7e-60 236.1 639 37.9
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 7.7e-60 236.1 638 35.3
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.0e-59 235.7 636 42.1
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.7e-59 235.0 628 35.2
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.2e-59 234.6 629 35.1
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.9e-59 234.2 629 34.5
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 6.5e-59 233.0 620 36.6
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 6.5e-59 233.0 624 38.1
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.1e-58 232.3 628 42.7
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.1e-58 232.3 628 42.7
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 1.1e-58 232.3 596 35.2
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.9e-58 231.5 621 37.0
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.9e-58 231.5 624 35.4
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 4.2e-58 230.3 621 35.4
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 9.4e-58 229.2 625 43.0
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 2.7e-57 227.6 625 42.7
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 2.7e-57 227.6 171 72.5
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 4.7e-57 226.9 620 36.3
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 6.1e-57 226.5 625 42.6
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.0e-56 225.7 626 33.5
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 1.0e-56 225.7 625 43.8
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 1.0e-56 225.7 640 48.3
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.4e-56 225.3 625 33.9
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 3.0e-56 224.2 623 40.9
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 3.0e-56 224.2 623 40.9
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 5.2e-56 223.4 625 35.2
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 8.8e-56 222.6 633 38.5
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 8.8e-56 222.6 625 34.7
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 8.8e-56 222.6 703 34.0
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 2.0e-55 221.5 169 69.8
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 2.6e-55 221.1 621 33.7
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 5.7e-55 219.9 621 36.9
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 7.5e-55 219.5 170 71.2
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 9.7e-55 219.2 629 37.4
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 1.3e-54 218.8 630 41.4
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 1.7e-54 218.4 681 40.8
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.7e-54 218.4 626 34.0
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 3.7e-54 217.2 626 42.7
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 3.7e-54 217.2 168 70.8
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 8.2e-54 216.1 170 70.0
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 8.2e-54 216.1 627 36.4
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 1.1e-53 215.7 625 37.4
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.1e-53 215.7 634 33.6
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.4e-53 215.3 624 39.9
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 1.8e-53 214.9 625 37.3
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 2.4e-53 214.5 636 37.1
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 5.3e-53 213.4 625 41.9
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 5.3e-53 213.4 177 68.9
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 9.1e-53 212.6 163 71.2
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 9.1e-53 212.6 647 50.1
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.2e-52 212.2 631 49.0
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.6e-52 211.8 630 36.7
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 2.9e-51 207.6 175 65.7
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.8e-51 207.2 625 47.2
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 3.8e-51 207.2 626 39.1
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 3.8e-51 207.2 624 40.4
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 8.5e-51 206.1 649 35.6
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.9e-50 204.9 624 39.1
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 1.6e-49 201.8 630 41.4
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 2.1e-49 201.4 624 44.4
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 4.4e-47 193.7 624 47.1
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 5.7e-47 193.4 630 47.0
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 9.8e-47 192.6 637 36.7
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.8e-46 190.3 619 40.1
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.4e-45 188.7 624 33.3
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 1.2e-44 185.7 655 39.4
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 4.0e-40 170.6 172 57.0
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 1.5e-39 168.7 171 57.9
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 2.3e-35 154.8 161 56.5
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 3.8e-35 154.1 174 55.7
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.5e-34 152.1 102 82.4
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 3.6e-33 147.5 86 89.5
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.3e-32 144.8 145 59.3
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.2e-31 142.5 86 86.0
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 1.3e-30 139.0 82 89.0
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 1.4e-29 135.6 633 44.2
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 2.4e-29 134.8 619 31.8
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.5e-26 125.6 589 25.3
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 4.3e-26 124.0 98 66.3
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 6.8e-24 116.7 105 63.8
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.4e-23 114.4 136 50.7
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 8.3e-22 109.8 105 59.0
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 8.3e-22 109.8 172 38.4
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.1e-21 109.4 511 33.5
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 1.9e-21 108.6 105 60.0
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.2e-20 105.9 154 46.1
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.3e-18 97.4 63 79.4
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 9.5e-18 96.3 177 35.6
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.2e-17 95.9 115 49.6
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 1.8e-16 92.0 85 63.5
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 2.3e-16 91.7 53 88.7
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.1e-16 91.3 522 26.8
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.4e-15 87.4 98 50.0
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.4e-13 82.4 83 51.8
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 3.5e-12 77.8 64 59.4
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 1.9e-10 72.0 87 47.1
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 2.5e-10 71.6 153 33.3
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 4.3e-10 70.9 159 28.9
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 8.9e-08 63.2 41 78.0
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 8.9e-08 63.2 59 57.6
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 3.8e-06 57.8 62 64.5


User provided reference genes

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