Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06253 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 2.0e-95 352.4 181 100.0
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 2.0e-39 166.4 126 71.4
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 4.0e-27 125.6 103 63.1
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 4.0e-27 125.6 90 68.9
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 8.9e-27 124.4 94 69.1
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 1.2e-26 124.0 129 51.2
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.5e-26 123.6 96 65.6
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 2.0e-26 123.2 103 62.1
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 2.6e-26 122.9 127 55.9
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 2.6e-26 122.9 90 67.8
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 2.6e-26 122.9 88 69.3
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 7.5e-26 121.3 131 52.7
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 9.8e-26 120.9 90 66.7
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.3e-25 120.6 145 51.0
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 1.3e-25 120.6 136 49.3
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 1.3e-25 120.6 88 65.9
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 1.3e-25 120.6 154 46.1
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 1.7e-25 120.2 83 69.9
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.7e-25 120.2 130 52.3
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 1.7e-25 120.2 135 51.1
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 1.7e-25 120.2 85 68.2
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 2.2e-25 119.8 150 48.0
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 2.2e-25 119.8 130 53.1
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 2.2e-25 119.8 97 66.0
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 2.9e-25 119.4 97 64.9
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 2.9e-25 119.4 90 67.8
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 4.9e-25 118.6 130 50.8
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 4.9e-25 118.6 130 50.8
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 4.9e-25 118.6 130 50.8
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 6.4e-25 118.2 95 60.0
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 6.4e-25 118.2 150 48.0
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 8.3e-25 117.9 99 60.6
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 8.3e-25 117.9 96 62.5
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 1.1e-24 117.5 132 51.5
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 1.1e-24 117.5 96 62.5
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 1.1e-24 117.5 96 62.5
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 1.1e-24 117.5 79 73.4
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 1.4e-24 117.1 90 64.4
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.4e-24 117.1 87 66.7
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 3.2e-24 115.9 95 62.1
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 4.1e-24 115.5 136 49.3
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 5.4e-24 115.2 90 63.3
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 7.0e-24 114.8 79 69.6
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 7.0e-24 114.8 132 49.2
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 9.2e-24 114.4 81 66.7
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 9.2e-24 114.4 108 57.4
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 3.5e-23 112.5 98 60.2
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 4.6e-23 112.1 81 66.7
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 6.0e-23 111.7 82 67.1
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 6.0e-23 111.7 131 50.4
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 1.3e-22 110.5 103 57.3
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 1.7e-22 110.2 95 63.2
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 1.7e-22 110.2 98 58.2
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 1.7e-22 110.2 129 48.8
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 1.7e-22 110.2 97 58.8
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 3.9e-22 109.0 96 62.5
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 3.9e-22 109.0 81 64.2
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 8.6e-22 107.8 95 60.0
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 8.6e-22 107.8 90 60.0
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 1.1e-21 107.5 81 65.4
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 1.5e-21 107.1 90 58.9
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.5e-21 107.1 88 65.9
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.9e-21 106.7 91 59.3
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.5e-21 106.3 98 58.2
unitig_26.g9713 Utricularia gibba HOM05D003624 ORTHO05D004188 3.3e-21 105.9 72 70.8
HPP92_019195 Vanilla planifolia HOM05D003624 ORTHO05D004188 3.3e-21 105.9 65 78.5
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 4.3e-21 105.5 145 42.1
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 9.5e-21 104.4 98 57.1
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 1.2e-20 104.0 79 64.6
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 1.6e-20 103.6 81 63.0
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 1.6e-20 103.6 81 64.2
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 1.6e-20 103.6 81 63.0
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.6e-20 103.6 84 59.5
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 2.1e-20 103.2 67 73.1
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 2.1e-20 103.2 113 50.4
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 3.6e-20 102.4 67 73.1
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 3.6e-20 102.4 67 73.1
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 3.6e-20 102.4 67 73.1
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 3.6e-20 102.4 67 73.1
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 3.6e-20 102.4 67 73.1
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 3.6e-20 102.4 97 57.7
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 3.6e-20 102.4 97 57.7
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 4.7e-20 102.1 67 71.6
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 4.7e-20 102.1 67 71.6
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 4.7e-20 102.1 90 60.0
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 4.7e-20 102.1 117 47.9
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 4.7e-20 102.1 125 50.4
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 1.1e-19 100.9 97 55.7
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 1.8e-19 100.1 127 47.2
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 1.8e-19 100.1 132 47.0
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 2.3e-19 99.8 67 70.1
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 5.2e-19 98.6 67 68.7
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 5.2e-19 98.6 67 68.7
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 8.9e-19 97.8 81 59.3
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 8.9e-19 97.8 79 60.8
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 8.9e-19 97.8 79 60.8
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 8.9e-19 97.8 79 60.8
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 2.0e-18 96.7 122 45.9
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 2.0e-18 96.7 76 61.8
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 3.4e-18 95.9 88 59.1
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 4.4e-18 95.5 90 57.8
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 7.5e-18 94.7 81 59.3
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 7.5e-18 94.7 81 59.3
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 7.5e-18 94.7 81 59.3
RcHm_v2.0_Chr2g0124981 Rosa chinensis HOM05D003624 ORTHO05D004188 1.3e-17 94.0 113 49.6
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 1.3e-17 94.0 120 47.5
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 1.7e-17 93.6 159 40.9
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.7e-17 93.6 95 54.7
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 6.4e-17 91.7 138 42.8
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 8.3e-17 91.3 104 51.9
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 8.3e-17 91.3 104 51.9
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 8.3e-17 91.3 66 66.7
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 8.3e-17 91.3 68 64.7
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 1.1e-16 90.9 95 50.5
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 1.1e-16 90.9 95 53.7
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.4e-16 90.5 68 63.2
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.4e-16 90.5 68 63.2
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 1.9e-16 90.1 105 46.7
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 1.9e-16 90.1 109 49.5
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.9e-16 90.1 88 56.8
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 2.4e-16 89.7 116 48.3
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 3.2e-16 89.4 124 41.9
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 9.2e-16 87.8 94 54.3
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 9.2e-16 87.8 75 60.0
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.2e-15 87.4 109 48.6
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.2e-15 87.4 109 48.6
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 2.1e-15 86.7 136 40.4
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 2.1e-15 86.7 109 47.7
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 2.7e-15 86.3 86 54.7
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 2.7e-15 86.3 109 48.6
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 7.8e-15 84.7 109 47.7
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 1.3e-14 84.0 95 51.6
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 1.7e-14 83.6 94 47.9
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 1.7e-14 83.6 109 47.7
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 3.0e-14 82.8 97 49.5
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 3.9e-14 82.4 97 49.5
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 3.9e-14 82.4 138 39.9
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.1e-13 80.9 179 34.1
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 1.1e-13 80.9 51 78.4
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 1.1e-13 80.9 149 39.6
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.9e-13 80.1 109 45.0
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 2.5e-13 79.7 99 44.4
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 3.3e-13 79.3 49 79.6
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 4.3e-13 79.0 81 51.9
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 5.6e-13 78.6 93 50.5
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 9.6e-13 77.8 51 74.5
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 9.6e-13 77.8 96 47.9
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 1.2e-12 77.4 49 73.5
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 1.6e-12 77.0 67 58.2
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 3.6e-12 75.9 94 43.6
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 4.7e-12 75.5 67 55.2
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 3.1e-11 72.8 68 55.9
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 6.8e-11 71.6 54 68.5
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 1.2e-10 70.9 67 55.2
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 3.4e-10 69.3 67 55.2
SEGI_33130 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 7.6e-10 68.2 67 62.7
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 1.7e-09 67.0 67 53.7
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 1.7e-09 67.0 67 53.7
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.1e-08 64.3 37 86.5
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.1e-08 64.3 37 86.5
arahy.Tifrunner.gnm1.ann1.T8I7QW Arachis hypogaea HOM05D003624 ORTHO05D004188 1.4e-08 63.9 40 77.5
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 5.4e-08 62.0 101 39.6
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.3e-06 57.4 61 55.7
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 5.1e-06 55.5 60 48.3


User provided reference genes

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