Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 1.1e-127 459.9 217 100.0
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 3.9e-13 79.3 41 82.9
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.1e-12 77.8 41 80.5
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 5.7e-12 75.5 56 60.7
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 6.3e-11 72.0 41 75.6
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.1e-10 71.2 56 58.9
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 5.3e-10 68.9 56 57.1
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 5.3e-10 68.9 56 58.9
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 9.1e-10 68.2 60 56.7
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-09 67.8 41 78.0
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.2e-09 67.8 41 78.0
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.2e-09 67.8 41 75.6
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.4e-09 66.2 42 76.2
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.4e-09 66.2 42 76.2
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 3.4e-09 66.2 41 73.2
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.4e-09 66.2 60 55.0
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 4.5e-09 65.9 90 45.6
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 4.5e-09 65.9 56 58.9
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.5e-09 65.9 56 58.9
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.5e-09 65.9 56 58.9
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 4.5e-09 65.9 56 58.9
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 4.5e-09 65.9 41 73.2
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 5.9e-09 65.5 41 75.6
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 5.9e-09 65.5 41 75.6
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 5.9e-09 65.5 41 75.6
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 73.2
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 5.9e-09 65.5 42 76.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 75.6
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 70.7
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 5.9e-09 65.5 41 73.2
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 7.7e-09 65.1 41 73.2
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 7.7e-09 65.1 56 57.1
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 7.7e-09 65.1 41 73.2
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 7.7e-09 65.1 41 73.2
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 7.7e-09 65.1 41 73.2
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.0e-08 64.7 44 68.2
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.0e-08 64.7 44 68.2
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.0e-08 64.7 44 68.2
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 1.0e-08 64.7 41 73.2
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 1.0e-08 64.7 55 60.0
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.0e-08 64.7 44 68.2
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.0e-08 64.7 41 75.6
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.0e-08 64.7 56 57.1
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.0e-08 64.7 44 68.2
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.3e-08 64.3 41 70.7
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.3e-08 64.3 41 70.7
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-08 64.3 41 73.2
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-08 64.3 41 73.2
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.3e-08 64.3 41 73.2
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.3e-08 64.3 41 75.6
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.3e-08 64.3 40 75.0
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 1.3e-08 64.3 44 68.2
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.7e-08 63.9 41 70.7
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.7e-08 63.9 41 73.2
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 1.7e-08 63.9 41 70.7
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.7e-08 63.9 40 72.5
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.7e-08 63.9 56 57.1
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 2.2e-08 63.5 42 73.8
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.2e-08 63.5 41 73.2
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 2.2e-08 63.5 54 63.0
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 2.2e-08 63.5 41 70.7
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 2.2e-08 63.5 42 71.4
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.2e-08 63.5 41 70.7
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 2.9e-08 63.2 41 70.7
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.9e-08 63.2 44 65.9
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 2.9e-08 63.2 41 70.7
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 2.9e-08 63.2 41 70.7
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 2.9e-08 63.2 41 70.7
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 3.8e-08 62.8 44 65.9
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 3.8e-08 62.8 41 70.7
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 3.8e-08 62.8 44 65.9
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 5.0e-08 62.4 41 73.2
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 5.0e-08 62.4 41 70.7
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 6.5e-08 62.0 41 70.7
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 6.5e-08 62.0 43 65.1
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 6.5e-08 62.0 43 65.1
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 8.5e-08 61.6 42 71.4
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 8.5e-08 61.6 44 65.9
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.1e-07 61.2 57 57.9
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.1e-07 61.2 41 65.9
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.4e-07 60.8 41 70.7
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.4e-07 60.8 41 70.7
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.4e-07 60.8 41 70.7
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 3.2e-07 59.7 41 68.3
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 4.2e-07 59.3 42 69.0
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 4.2e-07 59.3 56 51.8
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 4.2e-07 59.3 41 61.0
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 5.5e-07 58.9 42 69.0
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 5.5e-07 58.9 41 65.9
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.5e-07 58.9 42 69.0
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 5.5e-07 58.9 36 77.8
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 7.2e-07 58.5 45 62.2
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 9.4e-07 58.2 41 68.3
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 9.4e-07 58.2 41 68.3
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 9.4e-07 58.2 41 68.3
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.2e-06 57.8 40 72.5
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.6e-06 57.4 41 65.9
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 2.1e-06 57.0 42 69.0
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 2.1e-06 57.0 42 69.0
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 2.7e-06 56.6 35 77.1
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.7e-06 56.6 35 77.1
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 3.6e-06 56.2 35 77.1
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.7e-06 55.8 36 72.2
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 6.1e-06 55.5 36 77.8
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 6.1e-06 55.5 36 72.2


User provided reference genes

Program Settings