Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 4.1e-125 451.4 232 100.0
SEGI_14643 Sequoiadendron giganteum HOM05D003509 ORTHO05D004205 7.1e-37 158.3 98 86.7
SEGI_18143 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.5e-34 150.6 108 75.0
SEGI_09809 Sequoiadendron giganteum HOM05D002861 ORTHO05D003104 8.2e-33 144.8 108 72.2
SEGI_40718 Sequoiadendron giganteum HOM05D001120 ORTHO05D002943 8.2e-33 144.8 108 75.0
SEGI_40021 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 1.1e-32 144.4 104 76.9
SEGI_06105 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.8e-32 143.7 100 80.0
SEGI_40078 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 2.0e-31 140.2 108 70.4
SEGI_07692 Sequoiadendron giganteum HOM05D009212 ORTHO05D011771 2.6e-31 139.8 93 82.8
SEGI_27819 Sequoiadendron giganteum HOM05D002658 ORTHO05D003000 2.6e-31 139.8 107 71.0
SEGI_25499 Sequoiadendron giganteum HOM05D000058 ORTHO05D000255 4.5e-31 139.0 163 53.4
SEGI_32695 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 5.8e-31 138.7 107 71.0
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 1.7e-30 137.1 108 68.5
SEGI_18795 Sequoiadendron giganteum HOM05D000055 ORTHO05D000057 3.2e-29 132.9 107 68.2
SEGI_06890 Sequoiadendron giganteum HOM05D009212 ORTHO05D005404 3.9e-27 125.9 100 70.0
SEGI_13519 Sequoiadendron giganteum HOM05D001637 ORTHO05D002178 3.9e-27 125.9 96 70.8
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.3e-26 122.5 109 63.3
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.1e-24 116.3 107 62.6
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 3.9e-19 99.4 63 73.0
SEGI_00308 Sequoiadendron giganteum HOM05D001081 ORTHO05D006714 8.8e-19 98.2 81 67.9
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 7.4e-18 95.1 63 71.4
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 9.7e-18 94.7 63 71.4
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 6.3e-17 92.0 63 68.3
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 8.2e-17 91.7 64 62.5
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 8.2e-17 91.7 64 75.0
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 1.1e-16 91.3 63 66.7
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.4e-16 90.9 63 66.7
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 1.4e-16 90.9 63 66.7
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 1.8e-16 90.5 63 66.7
SEGI_23802 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 1.8e-16 90.5 50 90.0
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.8e-16 90.5 63 65.1
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 2.4e-16 90.1 63 66.7
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.4e-16 90.1 63 65.1
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 2.4e-16 90.1 63 65.1
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 3.1e-16 89.7 64 68.8
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 3.1e-16 89.7 63 63.5
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 6.9e-16 88.6 62 67.7
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 9.1e-16 88.2 63 65.1
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 9.1e-16 88.2 63 65.1
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.2e-15 87.8 63 60.3
Haze_05980 Corylus avellana HOM05D003481 ORTHO05D004001 1.2e-15 87.8 63 65.1
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.2e-15 87.8 63 63.5
SEGI_02000 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 1.2e-15 87.8 58 79.3
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.5e-15 87.4 64 65.6
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.5e-15 87.4 63 66.7
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.5e-15 87.4 63 66.7
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 1.5e-15 87.4 63 63.5
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 1.5e-15 87.4 63 63.5
SEGI_22363 Sequoiadendron giganteum HOM05D000931 ORTHO05D002226 1.5e-15 87.4 73 68.5
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.5e-15 87.4 62 64.5
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.0e-15 87.0 63 58.7
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 2.0e-15 87.0 63 66.7
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.0e-15 87.0 62 62.9
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 2.6e-15 86.7 63 65.1
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 2.6e-15 86.7 63 63.5
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 2.6e-15 86.7 63 61.9
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 3.4e-15 86.3 63 65.1
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 3.4e-15 86.3 62 66.1
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.4e-15 86.3 63 61.9
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 4.5e-15 85.9 63 63.5
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 4.5e-15 85.9 63 63.5
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 4.5e-15 85.9 62 66.1
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 4.5e-15 85.9 63 61.9
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.9e-15 85.5 63 58.7
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 5.9e-15 85.5 63 60.3
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 5.9e-15 85.5 63 63.5
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 5.9e-15 85.5 63 65.1
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 7.7e-15 85.1 63 63.5
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 7.7e-15 85.1 63 63.5
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 7.7e-15 85.1 63 61.9
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 7.7e-15 85.1 63 61.9
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 7.7e-15 85.1 63 61.9
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 7.7e-15 85.1 63 61.9
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.3e-14 84.3 63 60.3
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.3e-14 84.3 63 65.1
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.3e-14 84.3 63 61.9
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 1.7e-14 84.0 62 64.5
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 3.8e-14 82.8 63 60.3
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 3.8e-14 82.8 63 60.3
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 5.0e-14 82.4 63 61.9
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 5.0e-14 82.4 62 62.9
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 5.0e-14 82.4 63 61.9
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 5.0e-14 82.4 63 61.9
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 1.9e-13 80.5 63 58.7
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 2.5e-13 80.1 52 73.1
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.5e-13 80.1 63 61.9
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 4.2e-13 79.3 63 58.7
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 5.5e-13 79.0 63 58.7
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 5.5e-13 79.0 63 60.3
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 7.2e-13 78.6 72 51.4
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 7.2e-13 78.6 63 58.7
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 9.4e-13 78.2 63 58.7
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.2e-12 77.8 63 63.5
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 1.2e-12 77.8 61 60.7
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.6e-12 77.4 63 57.1
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 2.1e-12 77.0 63 55.6
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 2.7e-12 76.6 62 54.8
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 2.7e-12 76.6 63 60.3
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 2.7e-12 76.6 63 60.3
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 3.6e-12 76.3 71 54.9
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 4.7e-12 75.9 63 55.6
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.7e-12 75.9 63 58.7
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 6.1e-12 75.5 63 58.7
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 1.4e-11 74.3 63 58.7
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 2.3e-11 73.6 62 51.6
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 3.0e-11 73.2 62 53.2
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.1e-10 71.2 72 51.4
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 2.0e-10 70.5 63 55.6
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.3e-10 69.7 68 48.5
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 4.4e-10 69.3 63 54.0
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 7.4e-10 68.6 67 53.7
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 9.7e-10 68.2 83 42.2
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.3e-09 67.8 62 53.2
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 3.7e-09 66.2 76 43.4
Sabra16G0299500 Salix brachista HOM05D003481 ORTHO05D000002 3.7e-09 66.2 62 50.0
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 6.3e-09 65.5 62 46.8
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 6.3e-09 65.5 62 46.8
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 6.3e-09 65.5 62 46.8
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 6.3e-09 65.5 72 50.0
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 8.2e-09 65.1 62 46.8
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 8.2e-09 65.1 62 46.8
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 1.1e-08 64.7 62 46.8
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 1.1e-08 64.7 72 43.1
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.1e-08 64.7 82 41.5
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 1.4e-08 64.3 62 46.8
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.4e-08 64.3 62 46.8
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.4e-08 64.3 62 46.8
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 1.8e-08 63.9 62 45.2
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 1.8e-08 63.9 62 46.8
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 1.8e-08 63.9 62 46.8
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.8e-08 63.9 63 49.2
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.4e-08 63.5 62 46.8
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 3.1e-08 63.2 62 45.2
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 5.3e-08 62.4 84 39.3
HanXRQChr17g0556701 Helianthus annuus HOM05D003481 ORTHO05D004001 1.2e-07 61.2 76 38.2
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.5e-07 60.8 62 45.2
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 2.0e-07 60.5 62 45.2
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 4.5e-07 59.3 65 43.1
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 4.5e-07 59.3 62 43.5
SEGI_29207 Sequoiadendron giganteum HOM05D002187 ORTHO05D002243 5.9e-07 58.9 70 48.6
SEGI_10440 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 3.8e-06 56.2 66 48.5
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 6.5e-06 55.5 54 53.7
SEGI_07140 Sequoiadendron giganteum HOM05D000764 ORTHO05D002006 8.5e-06 55.1 54 55.6


User provided reference genes

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