Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.7e-163 579.3 301 100.0
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 1.3e-99 367.1 298 66.1
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 7.4e-95 351.3 300 64.0
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 1.7e-94 350.1 299 64.2
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 2.8e-94 349.4 299 64.5
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 3.7e-94 349.0 300 65.0
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 6.3e-94 348.2 300 64.0
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 1.1e-93 347.4 301 62.8
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 2.4e-93 346.3 300 63.0
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 2.4e-93 346.3 300 63.3
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 4.1e-93 345.5 299 64.5
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 5.3e-93 345.1 299 64.2
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 7.0e-93 344.7 299 63.9
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 1.6e-92 343.6 300 62.7
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 1.6e-92 343.6 300 63.0
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 5.9e-92 341.7 302 62.6
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 1.7e-91 340.1 292 64.0
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 5.0e-91 338.6 301 62.1
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 1.1e-90 337.4 299 61.5
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 1.1e-90 337.4 300 62.7
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 1.9e-90 336.7 300 62.3
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 4.2e-90 335.5 300 62.7
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 5.5e-90 335.1 299 61.2
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 9.4e-90 334.3 299 62.2
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 9.4e-90 334.3 300 62.3
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 9.4e-90 334.3 300 62.3
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 1.2e-89 334.0 300 61.0
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 3.6e-89 332.4 299 62.9
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 3.6e-89 332.4 300 61.3
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.7e-89 332.0 300 61.7
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 4.7e-89 332.0 298 60.4
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 6.1e-89 331.6 299 60.5
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 6.1e-89 331.6 299 60.5
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 6.1e-89 331.6 301 61.1
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 8.0e-89 331.3 300 61.3
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.0e-88 330.9 300 61.3
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 1.8e-88 330.1 299 62.2
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 2.3e-88 329.7 294 62.9
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 2.3e-88 329.7 300 61.3
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 3.0e-88 329.3 299 60.2
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 3.0e-88 329.3 303 61.4
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 3.0e-88 329.3 301 60.5
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 4.0e-88 328.9 303 60.7
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 4.0e-88 328.9 299 59.5
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 4.0e-88 328.9 298 61.4
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 5.2e-88 328.6 300 61.0
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 6.7e-88 328.2 299 61.2
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 6.7e-88 328.2 298 61.1
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 8.8e-88 327.8 298 60.7
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 1.2e-87 327.4 299 61.5
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 1.5e-87 327.0 302 60.3
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 2.6e-87 326.2 291 62.5
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 3.3e-87 325.9 298 60.4
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 3.3e-87 325.9 314 58.6
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 4.4e-87 325.5 294 61.6
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 4.4e-87 325.5 298 60.7
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 5.7e-87 325.1 301 60.5
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 7.5e-87 324.7 299 60.9
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 9.7e-87 324.3 302 60.9
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 9.7e-87 324.3 298 60.4
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 9.7e-87 324.3 299 61.2
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 9.7e-87 324.3 295 61.4
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 1.7e-86 323.6 303 60.7
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 1.7e-86 323.6 312 58.0
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 1.7e-86 323.6 298 61.1
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.2e-86 323.2 299 61.2
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 4.8e-86 322.0 289 60.9
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 4.8e-86 322.0 300 60.3
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 6.3e-86 321.6 298 59.7
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 8.2e-86 321.2 295 60.0
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 1.1e-85 320.9 298 60.1
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 1.1e-85 320.9 300 59.0
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 3.1e-85 319.3 295 60.3
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 3.1e-85 319.3 303 60.1
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 5.3e-85 318.5 302 57.0
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 5.3e-85 318.5 294 61.6
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 5.3e-85 318.5 300 60.7
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 7.0e-85 318.2 302 58.6
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 9.1e-85 317.8 302 57.0
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 9.1e-85 317.8 303 59.7
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 2.0e-84 316.6 296 59.8
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 3.5e-84 315.8 302 58.3
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 5.9e-84 315.1 295 59.3
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 1.0e-83 314.3 298 59.4
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 1.3e-83 313.9 294 59.2
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 1.3e-83 313.9 301 60.1
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 2.2e-83 313.2 300 60.0
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 3.8e-83 312.4 301 58.8
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 1.5e-82 310.5 298 58.7
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 1.5e-82 310.5 310 57.4
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 1.9e-82 310.1 303 59.1
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 5.5e-82 308.5 300 59.7
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 5.5e-82 308.5 301 60.1
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 1.2e-81 307.4 300 60.0
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 1.6e-81 307.0 299 57.9
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 8.0e-81 304.7 300 58.0
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 8.8e-80 301.2 316 57.9
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 1.5e-79 300.4 300 57.0
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 5.7e-79 298.5 316 54.1
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 3.7e-78 295.8 299 57.2
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 3.1e-77 292.7 300 56.7
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 4.1e-77 292.4 312 55.4
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 4.1e-77 292.4 312 55.4
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 7.0e-77 291.6 307 56.4
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 9.1e-77 291.2 312 56.1
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 9.1e-77 291.2 312 56.1
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 1.6e-76 290.4 313 55.6
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 2.0e-76 290.0 300 56.0
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 2.0e-76 290.0 320 54.4
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 2.0e-76 290.0 320 54.4
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 2.7e-76 289.7 299 56.5
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 7.7e-76 288.1 299 57.2
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 2.9e-75 286.2 312 54.8
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 5.0e-75 285.4 274 58.4
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 8.0e-73 278.1 313 53.4
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 2.3e-72 276.6 305 53.8
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 1.0e-67 261.2 306 52.0
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 8.6e-67 258.1 299 51.8
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 1.1e-66 257.7 309 51.8
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 3.0e-64 249.6 298 50.7
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 5.2e-64 248.8 298 52.3
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 8.9e-64 248.1 298 51.0
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 4.4e-63 245.7 289 50.5
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 1.6e-60 237.3 317 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 6.8e-56 221.9 299 48.5
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 2.0e-55 220.3 300 45.7
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 2.6e-55 219.9 226 58.8
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 2.5e-50 203.4 258 48.4
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 3.0e-35 153.3 112 75.0
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 3.0e-19 100.1 297 33.7
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 7.6e-15 85.5 72 70.8
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 2.4e-08 63.9 124 43.5
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 2.6e-07 60.5 53 54.7
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 5.8e-07 59.3 61 57.4


User provided reference genes

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