Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03564 Sequoiadendron giganteum HOM05D000181 ORTHO05D005757 5.7e-192 674.1 344 100.0
ATR0618G289 Amborella trichopoda HOM05D000181 ORTHO05D005757 9.8e-75 284.6 280 57.5
MBI05_g03462_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D005757 2.2e-66 256.9 223 61.0
Potri.009G043100 Populus trichocarpa HOM05D000181 ORTHO05D005757 2.0e-64 250.4 233 58.8
Sabra09G0030500 Salix brachista HOM05D000181 ORTHO05D005757 4.6e-64 249.2 234 58.5
CSS0008554 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D005757 5.9e-64 248.8 283 51.2
FvH4_3g38190 Fragaria vesca HOM05D000181 ORTHO05D005757 5.9e-64 248.8 265 52.8
FAN11G0623 Fragaria x ananassa HOM05D000181 ORTHO05D005757 5.9e-64 248.8 265 52.8
Atru.chr3.4273 Acer truncatum HOM05D000181 ORTHO05D005757 7.8e-64 248.4 232 58.2
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 1.0e-63 248.1 315 50.2
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 1.3e-63 247.7 264 53.4
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 1.7e-63 247.3 264 53.4
Nn2g11391 Nelumbo nucifera HOM05D000181 ORTHO05D005757 2.3e-63 246.9 282 52.1
CAN.G483.1 Capsicum annuum HOM05D000181 ORTHO05D005757 3.9e-63 246.1 287 51.2
Nitab4.5_0000102g0170 Nicotiana tabacum HOM05D000181 ORTHO05D005757 3.9e-63 246.1 287 52.3
Sopen06g001920 Solanum pennellii HOM05D000181 ORTHO05D005757 3.9e-63 246.1 293 52.2
COL.COLO4_19109 Corchorus olitorius HOM05D000181 ORTHO05D005757 5.0e-63 245.7 316 45.9
Cpa.g.sc112.54 Carica papaya HOM05D000181 ORTHO05D005757 6.6e-63 245.4 261 54.4
FAN25G0837 Fragaria x ananassa HOM05D000181 ORTHO05D005757 8.6e-63 245.0 298 50.7
CDE04G0235 Ceratophyllum demersum HOM05D000181 ORTHO05D005757 1.1e-62 244.6 228 56.1
Migut.N00882 Erythranthe guttata HOM05D000181 ORTHO05D005757 1.5e-62 244.2 235 57.9
Glyma.02G225300 Glycine max HOM05D000181 ORTHO05D005757 1.9e-62 243.8 298 48.0
Gorai.003G124400 Gossypium raimondii HOM05D000181 ORTHO05D005757 1.9e-62 243.8 272 52.9
Solyc06g005950.3 Solanum lycopersicum HOM05D000181 ORTHO05D005757 2.5e-62 243.4 293 51.5
Sc12g0000870 Simmondsia chinensis HOM05D000181 ORTHO05D005757 3.3e-62 243.0 288 50.7
Thecc.09G305500 Theobroma cacao HOM05D000181 ORTHO05D005757 3.3e-62 243.0 235 56.2
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 5.6e-62 242.3 281 51.2
Gohir.D03G117900 Gossypium hirsutum HOM05D000181 ORTHO05D005757 9.5e-62 241.5 272 52.6
THA.LOC104810725 Tarenaya hassleriana HOM05D000181 ORTHO05D005757 1.2e-61 241.1 326 46.3
Ciclev10027831m.g Citrus clementina HOM05D000181 ORTHO05D005757 1.6e-61 240.7 230 57.4
Potri.001G249100 Populus trichocarpa HOM05D000181 ORTHO05D005757 1.6e-61 240.7 239 55.6
SalBow2G0286 Salvia bowleyana HOM05D000181 ORTHO05D005757 1.6e-61 240.7 275 51.3
Dinv14464 Davidia involucrata HOM05D000181 ORTHO05D005757 2.1e-61 240.4 279 51.3
Gohir.A03G049400 Gossypium hirsutum HOM05D000181 ORTHO05D005757 2.1e-61 240.4 272 52.2
Glyma.14G192100 Glycine max HOM05D000181 ORTHO05D005757 3.6e-61 239.6 292 47.9
Peaxi162Scf00216g00037 Petunia axillaris HOM05D000181 ORTHO05D005757 3.6e-61 239.6 263 52.9
TAR633G0153 Trochodendron aralioides HOM05D000181 ORTHO05D005757 8.0e-61 238.4 282 52.1
Nitab4.5_0001970g0080 Nicotiana tabacum HOM05D000181 ORTHO05D005757 1.0e-60 238.0 287 52.3
RcHm_v2.0_Chr5g0068621 Rosa chinensis HOM05D000181 ORTHO05D005757 1.0e-60 238.0 291 50.5
Lj2A1078G39 Lonicera japonica HOM05D000181 ORTHO05D005757 1.4e-60 237.7 283 51.6
Manes.02G121800 Manihot esculenta HOM05D000181 ORTHO05D005757 1.4e-60 237.7 223 57.4
Eucgr.B02274 Eucalyptus grandis HOM05D000181 ORTHO05D005757 1.8e-60 237.3 228 57.5
Cc01_g13940 Coffea canephora HOM05D000181 ORTHO05D005757 2.3e-60 236.9 220 59.5
Cfa011653 Carpinus fangiana HOM05D000181 ORTHO05D005757 3.1e-60 236.5 227 55.9
Haze_24257 Corylus avellana HOM05D000181 ORTHO05D005757 3.1e-60 236.5 227 55.9
Prupe.6G060800 Prunus persica HOM05D000181 ORTHO05D005757 4.0e-60 236.1 229 57.2
MD11G1080400 Malus domestica HOM05D000181 ORTHO05D005757 6.8e-60 235.3 230 57.8
CiPaw.13G080800 Carya illinoinensis HOM05D000181 ORTHO05D005757 1.2e-59 234.6 279 49.5
arahy.Tifrunner.gnm1.ann1.ND684V Arachis hypogaea HOM05D000181 ORTHO05D005757 1.5e-59 234.2 228 55.7
DCAR_007391 Daucus carota HOM05D000181 ORTHO05D005757 1.5e-59 234.2 230 56.1
HanXRQChr05g0135651 Helianthus annuus HOM05D000181 ORTHO05D005757 1.5e-59 234.2 256 54.3
Manes.01G164300 Manihot esculenta HOM05D000181 ORTHO05D005757 1.5e-59 234.2 245 52.7
PSO384G0122 Papaver somniferum HOM05D000181 ORTHO05D005757 1.5e-59 234.2 230 56.5
TWI31G1099 Tripterygium wilfordii HOM05D000181 ORTHO05D005757 2.0e-59 233.8 229 56.3
MD03G1074100 Malus domestica HOM05D000181 ORTHO05D005757 2.6e-59 233.4 230 57.8
PSO339G2545 Papaver somniferum HOM05D000181 ORTHO05D005757 3.4e-59 233.0 230 56.1
CANSAT54G2135 Cannabis sativa HOM05D000181 ORTHO05D005757 4.4e-59 232.6 294 49.0
Thhalv10010128m.g Eutrema salsugineum HOM05D000181 ORTHO05D005757 4.4e-59 232.6 229 56.3
QL01p026829 Quercus lobata HOM05D000181 ORTHO05D005757 4.4e-59 232.6 224 56.2
MSTRG.12663 Avicennia marina HOM05D000181 ORTHO05D005757 7.5e-59 231.9 285 51.2
Gohir.D05G090800 Gossypium hirsutum HOM05D000181 ORTHO05D005757 1.7e-58 230.7 245 53.9
CARHR272800 Cardamine hirsuta HOM05D000181 ORTHO05D005757 2.2e-58 230.3 255 51.0
HanXRQChr06g0179431 Helianthus annuus HOM05D000181 ORTHO05D005757 2.2e-58 230.3 208 60.6
Gorai.009G093300 Gossypium raimondii HOM05D000181 ORTHO05D005757 2.9e-58 229.9 245 53.9
Aqoxy4G02662 Aquilegia oxysepala HOM05D000181 ORTHO05D005757 3.7e-58 229.6 295 45.4
Carub.0008s1951 Capsella rubella HOM05D000181 ORTHO05D005757 3.7e-58 229.6 262 49.2
ECA236G3476 Erigeron canadensis HOM05D000181 ORTHO05D005757 3.7e-58 229.6 279 51.3
Phvul.006G065400 Phaseolus vulgaris HOM05D000181 ORTHO05D005757 4.9e-58 229.2 270 50.0
SGA_v2.0_scaffold39G15251 Striga asiatica HOM05D000181 ORTHO05D005757 4.9e-58 229.2 283 48.4
AUR62001684 Chenopodium quinoa HOM05D000181 ORTHO05D005757 6.4e-58 228.8 309 47.2
VMungo0647G2397 Vigna mungo HOM05D000181 ORTHO05D005757 8.3e-58 228.4 219 57.1
LjContig00155g0009316 Lotus japonicus HOM05D000181 ORTHO05D005757 1.1e-57 228.0 260 50.4
AL3G40320 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 1.4e-57 227.6 258 49.6
AL8G35200 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 1.4e-57 227.6 258 49.6
CARHR155660 Cardamine hirsuta HOM05D000181 ORTHO05D005757 1.4e-57 227.6 224 54.0
AT3G47060 Arabidopsis thaliana HOM05D000181 ORTHO05D005757 1.9e-57 227.3 222 54.5
EL10Ac7g16127 Beta vulgaris HOM05D000181 ORTHO05D005757 1.9e-57 227.3 236 54.2
CiPaw.14G061100 Carya illinoinensis HOM05D000181 ORTHO05D005757 2.4e-57 226.9 212 57.1
Lalb_Chr04g0252331 Lupinus albus HOM05D000181 ORTHO05D005757 2.4e-57 226.9 226 54.9
Lalb_Chr10g0103271 Lupinus albus HOM05D000181 ORTHO05D005757 2.4e-57 226.9 226 55.3
unitig_8.g3694 Utricularia gibba HOM05D000181 ORTHO05D005757 2.4e-57 226.9 232 53.4
arahy.Tifrunner.gnm1.ann1.70SKLQ Arachis hypogaea HOM05D000181 ORTHO05D005757 3.2e-57 226.5 289 47.8
Duzib150G0876 Durio zibethinus HOM05D000181 ORTHO05D005757 3.2e-57 226.5 320 46.6
AL5G26300 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 4.1e-57 226.1 223 53.8
Ca_05586_v3 Cicer arietinum L. HOM05D000181 ORTHO05D005757 4.1e-57 226.1 331 43.5
Hund04887 Selenicereus undatus HOM05D000181 ORTHO05D005757 4.1e-57 226.1 365 42.7
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 5.4e-57 225.7 282 48.9
Phvul.008G262300 Phaseolus vulgaris HOM05D000181 ORTHO05D005757 5.4e-57 225.7 221 55.7
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 5.4e-57 225.7 327 44.0
ClCG03G000890 Citrullus lanatus HOM05D000181 ORTHO05D005757 7.0e-57 225.3 282 48.9
Lj6g0028119 Lotus japonicus HOM05D000181 ORTHO05D005757 7.0e-57 225.3 272 48.9
Sed0008141 Sechium edule HOM05D000181 ORTHO05D005757 7.0e-57 225.3 282 49.6
Carub.0005s1330 Capsella rubella HOM05D000181 ORTHO05D005757 9.2e-57 224.9 274 47.4
Sabra16G0151200 Salix brachista HOM05D000181 ORTHO05D005757 9.2e-57 224.9 236 53.8
CsaV3_1G036040 Cucumis sativus L. HOM05D000181 ORTHO05D005757 1.2e-56 224.6 282 48.6
Gohir.A05G089900 Gossypium hirsutum HOM05D000181 ORTHO05D005757 1.2e-56 224.6 281 48.8
Oeu049273.1 Olea europaea HOM05D000181 ORTHO05D005757 1.6e-56 224.2 286 48.6
BolC9t57960H Brassica oleracea HOM05D000181 ORTHO05D005757 2.7e-56 223.4 233 51.9
BraA10t43689Z Brassica rapa HOM05D000181 ORTHO05D005757 2.7e-56 223.4 229 52.4
A10p15460 Brassica napus HOM05D000181 ORTHO05D005757 6.0e-56 222.2 252 49.6
C09p51030 Brassica napus HOM05D000181 ORTHO05D005757 1.0e-55 221.5 256 48.8
BcaC04g19854 Brassica carinata HOM05D000181 ORTHO05D005757 1.3e-55 221.1 256 48.8
Sp5g14670 Schrenkiella parvula HOM05D000181 ORTHO05D005757 1.3e-55 221.1 248 50.8
THA.LOC104814906 Tarenaya hassleriana HOM05D000181 ORTHO05D005757 2.3e-55 220.3 222 55.0
CSS0046009 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D005757 3.0e-55 219.9 314 43.9
Sp6g20570 Schrenkiella parvula HOM05D000181 ORTHO05D005757 3.0e-55 219.9 264 46.6
AT5G58870 Arabidopsis thaliana HOM05D000181 ORTHO05D005757 3.9e-55 219.5 292 45.9
Medtr3g462930 Medicago truncatula HOM05D000181 ORTHO05D005757 2.5e-54 216.9 204 57.8
Aa31LG1G18900 Aethionema arabicum HOM05D000181 ORTHO05D005757 3.3e-54 216.5 343 41.7
Glyma.18G065600 Glycine max HOM05D000181 ORTHO05D005757 4.3e-54 216.1 227 52.4
Os02g0649700 Oryza sativa ssp. japonica HOM05D000181 ORTHO05D005757 2.1e-53 213.8 238 52.1
Lsat_1_v5_gn_8_71240 Lactuca sativa HOM05D000181 ORTHO05D005757 2.8e-53 213.4 195 59.0
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 3.6e-53 213.0 193 58.0
Zm00001eb248950 Zea mays HOM05D000181 ORTHO05D005757 3.6e-53 213.0 230 53.5
Medtr5g069780 Medicago truncatula HOM05D000181 ORTHO05D005757 4.7e-53 212.6 210 54.8
Rhsim13G0072100 Rhododendron simsii HOM05D000181 ORTHO05D005757 1.1e-52 211.5 233 51.5
TPR.G24052 Trifolium pratense HOM05D000181 ORTHO05D005757 1.8e-52 210.7 227 52.4
DCAR_005895 Daucus carota HOM05D000181 ORTHO05D005757 2.0e-51 207.2 222 51.4
BolC3t19414H Brassica oleracea HOM05D000181 ORTHO05D005757 2.6e-51 206.8 229 50.7
Ca_14910_v3 Cicer arietinum L. HOM05D000181 ORTHO05D005757 2.6e-51 206.8 301 45.8
A06p20470 Brassica napus HOM05D000181 ORTHO05D005757 3.4e-51 206.5 229 50.7
C03p71290 Brassica napus HOM05D000181 ORTHO05D005757 3.4e-51 206.5 229 50.7
BraA06t25122Z Brassica rapa HOM05D000181 ORTHO05D005757 3.4e-51 206.5 229 50.7
Ah.08g220730 Amaranthus hybridus HOM05D000181 ORTHO05D005757 5.8e-51 205.7 227 52.0
BcaC01g01859 Brassica carinata HOM05D000181 ORTHO05D005757 7.5e-51 205.3 229 50.7
vmacro02988 Vaccinium macrocarpon HOM05D000181 ORTHO05D005757 1.3e-50 204.5 234 49.1
Zm00001eb186240 Zea mays HOM05D000181 ORTHO05D005757 2.9e-50 203.4 329 44.7
Psat5g162280 Pisum sativum HOM05D000181 ORTHO05D005757 1.1e-49 201.4 285 43.5
Psat1g066520 Pisum sativum HOM05D000181 ORTHO05D005757 1.6e-48 197.6 208 51.4
Mapoly0001s0318 Marchantia polymorpha HOM05D000181 ORTHO05D005757 2.5e-46 190.3 310 41.3
AUR62020098 Chenopodium quinoa HOM05D000181 ORTHO05D005757 2.1e-45 187.2 191 56.0
Pp3c23_7140 Physcomitrium patens HOM05D000181 ORTHO05D005757 1.7e-42 177.6 307 41.0
Pp3c23_7144 Physcomitrium patens HOM05D000181 ORTHO05D005757 1.7e-42 177.6 307 41.0
SMO351G0531 Selaginella moellendorffii HOM05D000181 ORTHO05D005757 3.5e-40 169.9 247 44.1
Oeu009382.1 Olea europaea HOM05D000181 ORTHO05D005757 2.3e-39 167.2 226 44.2
VMungo0540G0029 Vigna mungo HOM05D000002 ORTHO05D005757 5.1e-39 166.0 203 47.8
AagrBONN_evm.TU.Sc2ySwM_228.748 Anthoceros agrestis HOM05D000181 ORTHO05D005757 1.5e-38 164.5 275 42.5
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 3.6e-37 159.8 252 40.1
TPR.G13266 Trifolium pratense HOM05D000181 ORTHO05D005757 2.6e-35 153.7 169 54.4
SHI05882 Sapria himalayana HOM05D000181 ORTHO05D005757 3.8e-34 149.8 237 36.7
CBR_g26107 Chara braunii HOM05D000181 ORTHO05D005757 2.4e-33 147.1 346 35.8
ATR0723G008 Amborella trichopoda HOM05D000181 ORTHO05D005757 2.2e-26 124.0 201 40.8
GSVIVG01024791001 Vitis vinifera HOM05D000181 ORTHO05D005757 9.6e-22 108.6 90 66.7
Actinidia38828 Actinidia chinensis HOM05D000181 ORTHO05D005757 4.0e-20 103.2 90 63.3
PGSC0003DMG400004149 Solanum tuberosum HOM05D000181 ORTHO05D005757 2.7e-16 90.5 274 32.5
Nn2g13621 Nelumbo nucifera HOM05D000181 ORTHO05D005757 3.5e-16 90.1 131 41.2
AUR62000942 Chenopodium quinoa HOM05D007147 ORTHO05D009166 1.2e-11 75.1 51 68.6
Oeu009381.1 Olea europaea HOM05D000181 ORTHO05D005757 4.9e-10 69.7 68 60.3
Ah.04g150050 Amaranthus hybridus HOM05D000181 ORTHO05D005757 6.5e-10 69.3 70 47.1
MCO15G462 Micromonas commoda HOM05D000181 ORTHO05D005757 1.4e-09 68.2 177 31.6


User provided reference genes

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