Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.0e-241 838.2 443 100.0
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 5.0e-156 555.1 419 68.7
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 5.5e-155 551.6 419 68.3
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 3.1e-150 535.8 426 64.3
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 5.9e-149 531.6 426 64.1
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 1.2e-146 523.9 426 63.6
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 1.3e-143 513.8 426 62.9
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 2.8e-143 512.7 426 62.7
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 8.6e-140 501.1 426 60.8
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 9.5e-139 497.7 426 59.2
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 4.7e-138 495.4 426 59.4
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 3.0e-137 492.7 426 59.4
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 4.0e-137 492.3 426 58.7
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 5.2e-137 491.9 426 59.9
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 8.9e-137 491.1 426 58.5
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 8.9e-137 491.1 418 59.6
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 4.4e-136 488.8 428 60.3
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 5.7e-136 488.4 426 58.7
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 5.7e-136 488.4 426 58.2
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 2.8e-135 486.1 426 59.6
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 2.8e-135 486.1 426 59.4
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 3.7e-135 485.7 426 58.5
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 4.9e-135 485.3 426 58.7
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 1.4e-134 483.8 426 58.5
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.2e-133 480.7 432 56.7
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 3.5e-133 479.2 432 56.9
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 3.5e-133 479.2 432 56.9
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 1.3e-132 477.2 426 58.0
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 1.7e-132 476.9 426 58.7
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 2.9e-132 476.1 437 56.3
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 2.9e-132 476.1 426 56.8
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 3.9e-132 475.7 426 57.5
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 6.6e-132 474.9 426 58.7
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 6.6e-132 474.9 430 58.8
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 8.6e-132 474.6 426 56.8
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.5e-131 473.8 426 57.5
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.5e-131 473.8 426 57.5
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 1.9e-131 473.4 432 56.2
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 2.5e-131 473.0 426 57.0
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 3.3e-131 472.6 426 57.3
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 2.8e-130 469.5 426 57.0
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 2.8e-130 469.5 426 57.0
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 2.8e-130 469.5 426 57.0
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 3.6e-130 469.2 426 57.3
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 4.7e-130 468.8 426 57.5
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 6.1e-130 468.4 426 57.5
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 8.0e-130 468.0 420 57.6
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 1.0e-129 467.6 426 56.1
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 3.1e-129 466.1 426 55.9
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 4.0e-129 465.7 426 56.8
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 8.9e-129 464.5 426 56.1
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 2.0e-128 463.4 426 56.6
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 2.6e-128 463.0 426 55.6
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 3.4e-128 462.6 426 55.9
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 4.4e-128 462.2 428 56.1
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 7.5e-128 461.5 426 55.6
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 9.8e-128 461.1 426 56.1
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.9e-127 459.5 426 55.4
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 4.9e-127 458.8 426 55.2
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 4.9e-127 458.8 428 54.9
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 6.4e-127 458.4 426 55.2
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 8.3e-127 458.0 426 54.7
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 1.1e-126 457.6 426 55.6
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 1.4e-126 457.2 426 55.9
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 2.4e-126 456.4 426 56.3
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 4.1e-126 455.7 426 54.5
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 5.4e-126 455.3 411 59.4
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 1.2e-125 454.1 426 54.0
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 1.2e-125 454.1 426 54.0
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 4.6e-125 452.2 419 55.6
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 1.0e-124 451.1 419 54.7
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-123 447.6 400 56.5
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 1.1e-121 441.0 426 53.1
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 2.3e-121 439.9 455 51.2
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 3.7e-119 432.6 426 54.2
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 6.4e-119 431.8 425 54.1
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 2.1e-117 426.8 426 53.8
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 3.9e-116 422.5 426 53.1
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 6.6e-116 421.8 420 54.3
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 3.3e-115 419.5 420 54.0
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 5.6e-115 418.7 420 54.0
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 9.5e-115 417.9 420 54.0
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 2.8e-114 416.4 420 54.5
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 4.7e-114 415.6 420 53.3
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 4.7e-114 415.6 433 52.0
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 2.3e-113 413.3 420 53.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 8.9e-113 411.4 426 51.9
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 7.6e-112 408.3 420 52.9
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 7.6e-112 408.3 420 52.6
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 9.9e-112 407.9 428 50.9
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 1.1e-110 404.4 420 52.6
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 1.1e-110 404.4 420 52.6
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 4.6e-109 399.1 340 59.1
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 1.5e-107 394.0 426 51.4
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 1.8e-105 387.1 425 51.1
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 3.2e-102 376.3 426 49.3
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 4.8e-98 362.5 345 55.4
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 1.9e-91 340.5 434 45.2
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 2.3e-84 317.0 266 64.7
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 2.9e-79 300.1 283 52.7
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.1e-70 271.6 429 38.9
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 7.9e-69 265.4 429 37.8
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 7.9e-69 265.4 401 39.2
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.5e-67 261.2 217 58.5
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 5.1e-60 236.1 221 57.9
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 6.7e-52 209.1 189 56.1
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 4.8e-42 176.4 421 30.9
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 4.8e-42 176.4 385 31.9
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 5.5e-38 162.9 478 27.6
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.2e-37 161.8 145 55.2
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 8.3e-26 122.5 113 53.1
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 1.5e-19 101.7 84 58.3
SEGI_20776 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 8.0e-13 79.3 45 86.7
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 8.9e-12 75.9 65 56.9
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.2e-08 65.5 52 59.6
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 2.7e-08 64.3 45 66.7
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.0e-07 60.8 56 48.2


User provided reference genes

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