Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03426 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 2.1e-51 205.3 95 100.0
SEGI_30607 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 1.3e-24 116.3 104 60.6
SMO116G0181 Selaginella moellendorffii HOM05D006964 ORTHO05D008861 8.5e-21 103.6 116 49.1
Nitab4.5_0002450g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 5.7e-17 90.9 103 53.4
CAN.G843.21 Capsicum annuum HOM05D006964 ORTHO05D008861 1.3e-16 89.7 98 52.0
Gohir.A08G050700 Gossypium hirsutum HOM05D006964 ORTHO05D008861 1.3e-16 89.7 104 50.0
Gohir.D08G060500 Gossypium hirsutum HOM05D006964 ORTHO05D008861 1.3e-16 89.7 104 50.0
Peaxi162Scf00314g00515 Petunia axillaris HOM05D006964 ORTHO05D008861 1.3e-16 89.7 104 50.0
QL04p064712 Quercus lobata HOM05D006964 ORTHO05D008861 1.3e-16 89.7 100 51.0
CiPaw.05G264600 Carya illinoinensis HOM05D006964 ORTHO05D008861 1.7e-16 89.4 103 47.6
QL04p064780 Quercus lobata HOM05D006964 ORTHO05D008861 1.7e-16 89.4 100 50.0
Thecc.01G176000 Theobroma cacao HOM05D006964 ORTHO05D008861 1.7e-16 89.4 104 49.0
arahy.Tifrunner.gnm1.ann1.3RSR9Y Arachis hypogaea HOM05D006964 ORTHO05D008861 2.2e-16 89.0 100 51.0
arahy.Tifrunner.gnm1.ann1.EIVX2Z Arachis hypogaea HOM05D006964 ORTHO05D008861 2.2e-16 89.0 100 51.0
Cfa016256 Carpinus fangiana HOM05D006964 ORTHO05D008861 2.2e-16 89.0 105 47.6
Haze_00006 Corylus avellana HOM05D006964 ORTHO05D008861 2.2e-16 89.0 105 47.6
Mapoly0100s0005 Marchantia polymorpha HOM05D006964 ORTHO05D008861 2.2e-16 89.0 104 47.1
Nitab4.5_0000663g0200 Nicotiana tabacum HOM05D006964 ORTHO05D008861 2.2e-16 89.0 98 52.0
Actinidia35156 Actinidia chinensis HOM05D006964 ORTHO05D008861 2.8e-16 88.6 104 50.0
Gorai.004G062600 Gossypium raimondii HOM05D006964 ORTHO05D008861 2.8e-16 88.6 100 51.0
TAR464G0001 Trochodendron aralioides HOM05D006964 ORTHO05D008861 2.8e-16 88.6 100 51.0
COL.COLO4_20003 Corchorus olitorius HOM05D006964 ORTHO05D008861 3.7e-16 88.2 104 49.0
MBI18_g18636_MAGBIO Magnolia biondii HOM05D006964 ORTHO05D008861 3.7e-16 88.2 106 47.2
THA.LOC104827506 Tarenaya hassleriana HOM05D006964 ORTHO05D008861 4.8e-16 87.8 117 43.6
Nitab4.5_0000660g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 6.3e-16 87.4 104 49.0
Lj1A623T74 Lonicera japonica HOM05D006964 ORTHO05D008861 8.3e-16 87.0 104 50.0
Lj1C622G7 Lonicera japonica HOM05D006964 ORTHO05D008861 8.3e-16 87.0 104 50.0
Potri.011G023800 Populus trichocarpa HOM05D006964 ORTHO05D008861 8.3e-16 87.0 98 50.0
PGSC0003DMG400014180 Solanum tuberosum HOM05D006964 ORTHO05D008861 1.1e-15 86.7 98 51.0
Carub.0001s2577 Capsella rubella HOM05D006964 ORTHO05D008861 1.4e-15 86.3 100 49.0
ATR0763G192 Amborella trichopoda HOM05D006964 ORTHO05D008861 1.8e-15 85.9 105 46.7
ClCG07G011010 Citrullus lanatus HOM05D006964 ORTHO05D008861 1.8e-15 85.9 98 49.0
TPR.G35899 Trifolium pratense HOM05D006964 ORTHO05D008861 1.8e-15 85.9 100 49.0
LjContig00081g0000792 Lotus japonicus HOM05D006964 ORTHO05D008861 2.4e-15 85.5 100 49.0
Sabra11G0014800 Salix brachista HOM05D006964 ORTHO05D008861 3.1e-15 85.1 98 49.0
Solyc03g118320.1 Solanum lycopersicum HOM05D006964 ORTHO05D008861 3.1e-15 85.1 98 50.0
Sopen03g037220 Solanum pennellii HOM05D006964 ORTHO05D008861 3.1e-15 85.1 98 50.0
AL1G40630 Arabidopsis lyrata HOM05D006964 ORTHO05D008861 4.1e-15 84.7 100 48.0
Nn7g38387 Nelumbo nucifera HOM05D006964 ORTHO05D008861 4.1e-15 84.7 100 49.0
vmacro11021 Vaccinium macrocarpon HOM05D006964 ORTHO05D008861 4.1e-15 84.7 101 49.5
CDE02G0076 Ceratophyllum demersum HOM05D006964 ORTHO05D008861 5.4e-15 84.3 100 49.0
Phvul.008G290000 Phaseolus vulgaris HOM05D006964 ORTHO05D008861 5.4e-15 84.3 100 49.0
Atru.chr8.1035 Acer truncatum HOM05D006964 ORTHO05D008861 7.0e-15 84.0 97 49.5
Ca_06492_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 7.0e-15 84.0 100 48.0
Ciclev10011398m.g Citrus clementina HOM05D006964 ORTHO05D008861 7.0e-15 84.0 100 47.0
Manes.16G000700 Manihot esculenta HOM05D006964 ORTHO05D008861 7.0e-15 84.0 98 49.0
Sed0000140 Sechium edule HOM05D006964 ORTHO05D008861 7.0e-15 84.0 100 48.0
CsaV3_4G007230 Cucumis sativus L. HOM05D006964 ORTHO05D008861 9.1e-15 83.6 100 47.0
Glyma.14G003100 Glycine max HOM05D006964 ORTHO05D008861 9.1e-15 83.6 98 49.0
BcaC06g35275 Brassica carinata HOM05D006964 ORTHO05D008861 1.2e-14 83.2 100 47.0
BolC7t42303H Brassica oleracea HOM05D006964 ORTHO05D008861 1.2e-14 83.2 100 47.0
CARHR026810 Cardamine hirsuta HOM05D006964 ORTHO05D008861 1.2e-14 83.2 100 46.0
unitig_699.g19570 Utricularia gibba HOM05D006964 ORTHO05D008861 1.2e-14 83.2 96 46.9
Aqoxy7G03560 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 1.6e-14 82.8 100 48.0
Thhalv10009719m.g Eutrema salsugineum HOM05D006964 ORTHO05D008861 1.6e-14 82.8 105 43.8
Lalb_Chr10g0101591 Lupinus albus HOM05D006964 ORTHO05D008861 1.6e-14 82.8 98 49.0
Oeu061991.1 Olea europaea HOM05D006964 ORTHO05D008861 1.6e-14 82.8 98 48.0
Sp1g23470 Schrenkiella parvula HOM05D006964 ORTHO05D008861 1.6e-14 82.8 100 47.0
AT1G24290 Arabidopsis thaliana HOM05D006964 ORTHO05D008861 2.0e-14 82.4 100 47.0
Cpa.g.sc332.3 Carica papaya HOM05D006964 ORTHO05D008861 2.0e-14 82.4 100 48.0
Eucgr.A00951 Eucalyptus grandis HOM05D006964 ORTHO05D008861 2.0e-14 82.4 97 48.5
Lsat_1_v5_gn_1_40040 Lactuca sativa HOM05D006964 ORTHO05D008861 2.0e-14 82.4 100 47.0
Medtr5g098850 Medicago truncatula HOM05D006964 ORTHO05D008861 2.0e-14 82.4 100 47.0
SalBow7G2824 Salvia bowleyana HOM05D006964 ORTHO05D008861 2.0e-14 82.4 97 49.5
Psat2g001680 Pisum sativum HOM05D006964 ORTHO05D008861 2.7e-14 82.0 100 47.0
GSVIVG01015905001 Vitis vinifera HOM05D006964 ORTHO05D008861 2.7e-14 82.0 104 48.1
A07p12030 Brassica napus HOM05D006964 ORTHO05D008861 3.5e-14 81.6 97 47.4
BraA07t28989Z Brassica rapa HOM05D006964 ORTHO05D008861 3.5e-14 81.6 97 47.4
Hma1.2p1_0391F.1_g142860 Hydrangea macrophylla HOM05D006964 ORTHO05D008861 3.5e-14 81.6 100 48.0
C07p17970 Brassica napus HOM05D006964 ORTHO05D008861 4.5e-14 81.3 100 46.0
Dinv35124 Davidia involucrata HOM05D006964 ORTHO05D008861 4.5e-14 81.3 100 47.0
Nitab4.5_0004302g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 4.5e-14 81.3 104 47.1
HanXRQChr11g0342451 Helianthus annuus HOM05D006964 ORTHO05D008861 5.9e-14 80.9 100 46.0
PGR031G2089 Punica granatum HOM05D006964 ORTHO05D008861 7.7e-14 80.5 100 47.0
Cc11_g00270 Coffea canephora HOM05D006964 ORTHO05D008861 1.0e-13 80.1 98 45.9
RcHm_v2.0_Chr7g0233321 Rosa chinensis HOM05D006964 ORTHO05D008861 1.0e-13 80.1 100 46.0
Aa31LG7G9960 Aethionema arabicum HOM05D006964 ORTHO05D008861 1.7e-13 79.3 100 44.0
FvH4_5g33930 Fragaria vesca HOM05D006964 ORTHO05D008861 1.7e-13 79.3 100 46.0
FAN08G0714 Fragaria x ananassa HOM05D006964 ORTHO05D008861 1.7e-13 79.3 100 46.0
FAN18G1087 Fragaria x ananassa HOM05D006964 ORTHO05D008861 1.7e-13 79.3 100 46.0
MD03G1299000 Malus domestica HOM05D006964 ORTHO05D008861 1.7e-13 79.3 100 47.0
Rhsim02G0171800 Rhododendron simsii HOM05D006964 ORTHO05D008861 1.7e-13 79.3 100 48.0
Sc07g0001890 Simmondsia chinensis HOM05D006964 ORTHO05D008861 1.7e-13 79.3 98 45.9
BcaB03g13997 Brassica carinata HOM05D006964 ORTHO05D008861 2.3e-13 79.0 100 44.0
Eucgr.F00067 Eucalyptus grandis HOM05D006964 ORTHO05D008861 5.0e-13 77.8 90 50.0
SGA_v2.0_scaffold73G24408 Striga asiatica HOM05D006964 ORTHO05D008861 8.6e-13 77.0 98 44.9
PSO677G0001 Papaver somniferum HOM05D006964 ORTHO05D008861 1.9e-12 75.9 96 44.8
AUR62003549 Chenopodium quinoa HOM05D006964 ORTHO05D008861 3.2e-12 75.1 98 45.9
EL10Ac6g15329 Beta vulgaris HOM05D006964 ORTHO05D008861 4.2e-12 74.7 98 43.9
SHI28197 Sapria himalayana HOM05D006964 ORTHO05D008861 4.2e-12 74.7 100 44.0
AUR62017863 Chenopodium quinoa HOM05D006964 ORTHO05D008861 5.5e-12 74.3 98 44.9
ECA234G0414 Erigeron canadensis HOM05D006964 ORTHO05D008861 5.5e-12 74.3 100 44.0
Pp3c24_11680 Physcomitrium patens HOM05D006964 ORTHO05D008861 2.1e-11 72.4 89 46.1
Ah.02g121270 Amaranthus hybridus HOM05D006964 ORTHO05D008861 2.8e-11 72.0 98 42.9
HPP92_016414 Vanilla planifolia HOM05D006964 ORTHO05D008861 4.4e-09 64.7 93 41.9
Pp3c23_21270 Physcomitrium patens HOM05D006964 ORTHO05D008861 8.3e-08 60.5 89 39.3
MD11G1318300 Malus domestica HOM05D006964 ORTHO05D008861 4.1e-07 58.2 46 63.0
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 1.2e-06 56.6 56 48.2
Ca_28576_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 7.8e-06 53.9 102 36.3


User provided reference genes

Program Settings