Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.1e-55 218.8 111 100.0
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 2.5e-16 89.0 72 58.3
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.3e-16 88.6 77 59.7
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 4.3e-16 88.2 72 61.1
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 4.3e-16 88.2 72 58.3
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 4.3e-16 88.2 72 59.7
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 9.7e-16 87.0 72 58.3
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.3e-15 86.7 72 58.3
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.3e-15 86.7 72 56.9
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 2.8e-15 85.5 77 53.2
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 8.2e-15 84.0 77 55.8
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 8.2e-15 84.0 77 55.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 8.2e-15 84.0 72 55.6
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.1e-14 83.6 75 54.7
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.4e-14 82.4 72 52.8
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.1e-14 82.0 72 55.6
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 3.1e-14 82.0 72 58.3
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 4.1e-14 81.6 75 57.3
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 5.3e-14 81.3 72 56.9
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 6.9e-14 80.9 75 52.0
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 9.0e-14 80.5 77 49.4
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 9.0e-14 80.5 77 49.4
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.0e-14 80.5 77 49.4
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.0e-14 80.5 77 49.4
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.0e-14 80.5 77 49.4
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.2e-13 80.1 77 49.4
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.2e-13 80.1 77 51.9
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.5e-13 79.7 72 55.6
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.5e-13 79.7 72 52.8
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.5e-13 79.7 72 54.2
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 2.0e-13 79.3 72 52.8
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.0e-13 79.3 72 52.8
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 2.6e-13 79.0 77 48.1
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 3.4e-13 78.6 72 52.8
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 3.4e-13 78.6 77 51.9
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.4e-13 78.6 77 51.9
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.4e-13 78.6 77 51.9
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.5e-13 78.2 72 51.4
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.5e-13 78.2 72 55.6
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.3e-12 76.6 72 52.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.3e-12 76.6 72 52.8
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.7e-12 76.3 77 46.8
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.7e-12 76.3 77 50.6
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.9e-12 75.5 72 51.4
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 2.9e-12 75.5 72 50.0
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.8e-12 75.1 72 52.8
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.8e-12 75.1 72 51.4
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 3.8e-12 75.1 72 51.4
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.0e-12 74.7 77 49.4
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 6.5e-12 74.3 72 50.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 6.5e-12 74.3 74 50.0
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 6.5e-12 74.3 71 50.7
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 8.5e-12 73.9 72 51.4
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 8.5e-12 73.9 72 51.4
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.1e-11 73.6 72 48.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.1e-11 73.6 78 51.3
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.4e-11 73.2 72 50.0
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.9e-11 72.8 72 48.6
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.9e-11 72.8 72 50.0
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 1.9e-11 72.8 71 49.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.9e-11 72.8 81 49.4
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 2.5e-11 72.4 72 48.6
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 3.2e-11 72.0 77 46.8
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 3.2e-11 72.0 72 50.0
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 3.2e-11 72.0 72 50.0
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 4.2e-11 71.6 76 47.4
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 4.2e-11 71.6 86 47.7
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.2e-11 71.6 72 50.0
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 5.5e-11 71.2 72 48.6
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 5.5e-11 71.2 72 51.4
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 5.5e-11 71.2 77 44.2
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 7.2e-11 70.9 92 42.4
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 7.2e-11 70.9 77 44.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 7.2e-11 70.9 71 49.3
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 9.4e-11 70.5 73 47.9
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-10 70.1 72 50.0
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-10 70.1 72 50.0
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.2e-10 70.1 72 47.2
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.6e-10 69.7 72 48.6
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 2.7e-10 68.9 77 48.1
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.7e-10 68.9 74 50.0
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 4.6e-10 68.2 73 52.1
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 6.1e-10 67.8 92 42.4
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 6.1e-10 67.8 72 45.8
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 7.9e-10 67.4 76 51.3
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.0e-09 67.0 77 44.2
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.0e-09 67.0 77 45.5
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.0e-09 67.0 79 46.8
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.4e-09 66.6 77 48.1
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.4e-09 66.6 77 44.2
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.4e-09 66.6 77 45.5
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 1.8e-09 66.2 75 45.3
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.8e-09 66.2 77 44.2
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.8e-09 66.2 77 46.8
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.8e-09 66.2 77 46.8
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.3e-09 65.9 72 44.4
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 3.0e-09 65.5 72 48.6
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 3.9e-09 65.1 98 38.8
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 3.9e-09 65.1 98 38.8
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.9e-09 65.1 72 45.8
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.9e-09 65.1 98 37.8
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.1e-09 64.7 72 45.8
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 6.7e-09 64.3 72 44.4
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 6.7e-09 64.3 72 44.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.5e-08 63.2 77 45.5
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.5e-08 63.2 77 45.5
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.5e-08 63.2 77 45.5
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.5e-08 63.2 77 45.5
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.5e-08 63.2 77 45.5
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.9e-08 62.8 93 41.9
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.9e-08 62.8 72 43.1
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.3e-08 62.0 72 45.8
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 5.7e-08 61.2 77 44.2
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 9.7e-08 60.5 97 39.2
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.7e-07 59.7 76 46.1
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 2.2e-07 59.3 72 44.4
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 2.2e-07 59.3 77 44.2
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.2e-07 59.3 77 40.3
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 3.7e-07 58.5 92 40.2
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 6.3e-07 57.8 92 42.4
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 6.3e-07 57.8 92 42.4
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 8.2e-07 57.4 72 44.4
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.1e-06 57.0 54 51.9


User provided reference genes

Program Settings