Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 0.0e+00 1171.0 596 100.0
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.6e-210 735.3 596 63.3
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 6.2e-210 734.6 602 64.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 2.4e-209 732.6 599 63.8
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 3.2e-206 722.2 598 63.4
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.4e-200 702.2 597 60.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 4.9e-199 698.4 599 60.6
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 8.4e-199 697.6 598 60.0
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 7.8e-197 691.0 597 59.0
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.7e-196 687.6 600 59.2
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.5e-195 686.8 603 58.5
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 2.5e-195 686.0 601 58.6
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 3.3e-195 685.6 597 59.1
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 9.6e-195 684.1 599 59.3
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 9.0e-193 677.6 600 59.0
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 2.0e-192 676.4 598 59.4
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 2.6e-192 676.0 595 58.7
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 3.8e-191 672.2 600 58.5
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 3.8e-191 672.2 587 61.5
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.4e-190 670.2 597 58.6
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.6e-189 666.8 600 59.0
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 2.1e-189 666.4 598 57.9
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 2.1e-189 666.4 612 58.2
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 4.6e-189 665.2 597 58.0
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 7.9e-189 664.5 599 58.1
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.8e-188 663.3 617 57.1
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 2.3e-188 662.9 597 57.5
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 3.0e-188 662.5 601 59.7
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 3.0e-188 662.5 631 55.8
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 6.7e-188 661.4 597 57.6
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.9e-187 659.8 601 58.2
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 1.9e-187 659.8 597 58.0
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.9e-187 659.8 605 57.0
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 2.8e-186 656.0 597 57.5
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.8e-186 656.0 602 56.8
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 3.7e-186 655.6 609 56.2
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.7e-186 655.6 627 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.8e-185 653.3 602 58.5
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.5e-184 650.2 597 56.1
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.7e-183 646.7 563 58.6
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 3.8e-183 645.6 596 56.4
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 3.8e-183 645.6 598 56.7
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 3.8e-183 645.6 598 56.9
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 6.4e-183 644.8 599 56.4
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.1e-182 644.0 603 57.0
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.1e-182 644.0 599 56.6
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.9e-182 643.3 600 55.2
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 4.2e-182 642.1 597 55.1
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 5.5e-182 641.7 597 55.9
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 7.1e-182 641.3 600 55.5
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 7.1e-182 641.3 596 57.0
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 7.1e-182 641.3 600 55.5
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 1.6e-181 640.2 600 55.7
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 6.0e-181 638.3 596 55.9
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 2.3e-180 636.3 599 56.6
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.3e-180 636.3 598 56.5
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 3.9e-180 635.6 599 56.3
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 5.1e-180 635.2 599 56.3
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 5.1e-180 635.2 598 55.5
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 5.1e-180 635.2 605 56.5
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 5.1e-180 635.2 601 56.2
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 6.7e-180 634.8 596 56.7
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.5e-179 633.6 603 55.9
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.5e-179 632.9 599 56.8
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 2.5e-179 632.9 600 55.7
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.5e-179 632.9 596 55.0
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 3.3e-179 632.5 600 56.2
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 3.3e-179 632.5 596 55.0
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 5.6e-179 631.7 600 56.5
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 5.6e-179 631.7 596 55.0
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.3e-178 630.6 594 55.2
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.3e-178 630.6 601 55.9
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.6e-178 630.2 598 54.8
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.1e-178 629.8 605 56.2
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 2.8e-178 629.4 599 55.3
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 2.8e-178 629.4 601 54.9
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 6.2e-178 628.2 597 53.6
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 8.2e-178 627.9 596 56.2
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 8.2e-178 627.9 596 54.2
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.8e-177 626.7 598 55.5
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.4e-177 626.3 601 55.7
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 2.4e-177 626.3 601 55.2
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.0e-177 625.5 604 55.6
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.3e-177 625.2 596 55.2
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 5.3e-177 625.2 603 55.6
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 6.9e-177 624.8 604 55.0
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.5e-176 623.6 596 54.5
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.5e-176 623.6 603 55.1
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.0e-175 620.9 596 54.9
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.7e-175 620.2 597 54.4
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.7e-175 620.2 598 55.0
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 2.2e-175 619.8 599 53.3
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 6.5e-175 618.2 595 54.6
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 1.9e-174 616.7 517 60.3
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 5.5e-174 615.1 586 55.5
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 9.3e-174 614.4 602 55.0
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.2e-173 614.0 597 53.8
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.0e-172 610.9 600 53.2
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.8e-172 610.1 591 54.7
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 8.7e-172 607.8 596 52.9
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 1.9e-171 606.7 601 53.2
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 4.3e-171 605.5 594 55.1
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.8e-170 602.8 536 58.8
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 1.1e-169 600.9 597 53.3
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.8e-169 600.1 600 52.8
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 2.4e-169 599.7 579 54.4
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.1e-169 599.4 596 55.7
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 6.1e-165 585.1 597 53.4
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 7.9e-165 584.7 603 52.4
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.9e-164 582.4 598 53.2
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 2.8e-162 576.2 598 52.3
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.8e-162 576.2 598 52.3
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 4.8e-162 575.5 598 52.8
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.8e-161 573.5 598 52.5
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.4e-160 569.3 598 52.3
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 4.5e-160 568.9 597 52.1
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 2.9e-159 566.2 598 51.8
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.2e-158 562.8 596 51.3
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 6.7e-156 555.1 516 57.0
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.2e-154 550.1 590 50.0
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 3.7e-154 549.3 592 53.7
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 9.1e-145 518.1 498 54.8
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.0e-143 514.6 536 53.5
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.4e-137 493.4 597 47.7
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 2.6e-131 473.4 628 43.5
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.2e-128 464.5 459 53.2
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.1e-126 458.0 464 53.0
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 3.3e-126 456.4 471 50.1
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.0e-120 437.2 600 44.2
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 8.3e-106 388.7 412 52.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 2.1e-101 374.0 508 41.9
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.5e-96 356.7 330 53.9
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.5e-91 341.3 374 52.9
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 4.4e-91 339.7 480 41.5
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.0e-87 327.0 337 53.4
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 8.1e-85 318.9 497 42.9
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.4e-73 281.6 374 45.5
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 4.8e-69 266.5 335 46.0
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 3.5e-56 223.8 183 59.6
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.3e-55 221.9 190 61.1
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.6e-53 214.9 162 64.2
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.9e-51 206.5 134 67.2
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.2e-48 198.7 207 51.7
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 2.3e-39 167.9 89 94.4
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 1.1e-38 165.6 396 34.1
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.8e-36 158.3 119 61.3
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 5.7e-30 136.7 113 57.5
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 7.5e-30 136.3 113 56.6
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 3.7e-29 134.0 126 54.8
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.7e-24 117.9 97 59.8
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.0e-24 116.3 97 58.8
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 1.1e-20 105.9 66 69.7
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 2.2e-18 98.2 82 59.8
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.5e-18 96.3 197 37.1
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.1e-16 91.7 189 33.3
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.8e-15 88.6 104 49.0
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 5.2e-15 87.0 152 38.8
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 8.8e-15 86.3 184 35.9
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 3.1e-12 77.8 56 60.7
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 4.1e-12 77.4 60 56.7
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 7.7e-11 73.2 110 41.8
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 8.0e-08 63.2 62 58.1
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 5.2e-07 60.5 41 73.2
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 9.8e-06 56.2 35 68.6


User provided reference genes

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