Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 3.8e-67 258.1 135 100.0
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 3.2e-13 79.0 55 70.9
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 4.2e-13 78.6 55 67.3
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 9.3e-13 77.4 55 67.3
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 1.2e-12 77.0 55 69.1
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 1.6e-12 76.6 115 44.3
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 4.6e-12 75.1 54 68.5
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 6.0e-12 74.7 54 64.8
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 6.0e-12 74.7 54 66.7
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 6.0e-12 74.7 54 66.7
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 1.0e-11 73.9 54 66.7
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 1.3e-11 73.6 54 66.7
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 1.3e-11 73.6 54 66.7
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 1.3e-11 73.6 54 63.0
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.8e-11 73.2 54 66.7
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 1.8e-11 73.2 55 65.5
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 1.8e-11 73.2 54 66.7
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 2.3e-11 72.8 55 65.5
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 3.0e-11 72.4 54 64.8
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 3.0e-11 72.4 54 61.1
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 3.0e-11 72.4 55 63.6
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 3.0e-11 72.4 54 63.0
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 5.1e-11 71.6 65 61.5
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 5.1e-11 71.6 49 71.4
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 5.1e-11 71.6 54 64.8
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 5.1e-11 71.6 54 64.8
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 5.1e-11 71.6 53 64.2
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 5.1e-11 71.6 54 66.7
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 5.1e-11 71.6 55 63.6
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 6.7e-11 71.2 54 63.0
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 6.7e-11 71.2 54 66.7
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 8.7e-11 70.9 55 63.6
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 8.7e-11 70.9 54 64.8
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 1.1e-10 70.5 55 61.8
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 61.1
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 61.1
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 61.1
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 61.1
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 61.1
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 61.1
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 61.1
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 64.8
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 64.8
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 63.0
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 1.5e-10 70.1 54 63.0
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 1.5e-10 70.1 57 61.4
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 1.9e-10 69.7 54 63.0
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-10 69.7 49 69.4
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 1.9e-10 69.7 54 63.0
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 1.9e-10 69.7 54 64.8
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.5e-10 69.3 49 69.4
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 2.5e-10 69.3 54 59.3
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 2.5e-10 69.3 71 53.5
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 2.5e-10 69.3 54 63.0
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 2.5e-10 69.3 54 64.8
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 3.3e-10 68.9 54 59.3
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 3.3e-10 68.9 54 64.8
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 4.3e-10 68.6 54 61.1
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 4.3e-10 68.6 54 61.1
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 4.3e-10 68.6 54 63.0
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.3e-10 68.6 54 63.0
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.3e-10 68.6 54 63.0
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.3e-10 68.6 54 63.0
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.3e-10 68.6 54 63.0
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 4.3e-10 68.6 72 55.6
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 4.3e-10 68.6 126 40.5
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 4.3e-10 68.6 126 40.5
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 5.6e-10 68.2 54 55.6
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 5.6e-10 68.2 54 64.8
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 5.6e-10 68.2 54 61.1
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 7.4e-10 67.8 55 60.0
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 7.4e-10 67.8 54 59.3
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 7.4e-10 67.8 54 61.1
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 7.4e-10 67.8 55 61.8
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 7.4e-10 67.8 55 61.8
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 7.4e-10 67.8 54 64.8
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 9.6e-10 67.4 54 59.3
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 9.6e-10 67.4 54 57.4
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 1.3e-09 67.0 92 44.6
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 1.6e-09 66.6 53 58.5
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 1.6e-09 66.6 54 61.1
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.6e-09 66.6 52 63.5
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.6e-09 66.6 54 61.1
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 1.6e-09 66.6 55 60.0
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.8e-09 65.9 48 68.8
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.8e-09 65.9 52 61.5
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 2.8e-09 65.9 55 60.0
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 2.8e-09 65.9 54 59.3
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 2.8e-09 65.9 54 59.3
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 3.7e-09 65.5 55 60.0
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 3.7e-09 65.5 55 60.0
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 4.8e-09 65.1 55 60.0
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 6.2e-09 64.7 54 57.4
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 6.2e-09 64.7 64 54.7
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 6.2e-09 64.7 54 61.1
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 8.2e-09 64.3 54 61.1
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 1.1e-08 63.9 54 61.1
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 1.1e-08 63.9 52 59.6
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.1e-08 63.9 52 61.5
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 1.4e-08 63.5 54 55.6
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 1.4e-08 63.5 54 55.6
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 1.8e-08 63.2 54 59.3
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 3.1e-08 62.4 55 61.8
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 3.1e-08 62.4 48 60.4
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 3.1e-08 62.4 59 55.9
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 6.9e-08 61.2 53 54.7
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 1.2e-07 60.5 111 40.5
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 2.0e-07 59.7 54 57.4
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.6e-07 59.3 69 47.8
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 3.4e-07 58.9 54 57.4
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 1.0e-06 57.4 49 51.0
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 2.2e-06 56.2 53 54.7
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 3.8e-06 55.5 56 55.4
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 6.5e-06 54.7 56 50.0


User provided reference genes

Program Settings