Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01300 Sequoiadendron giganteum HOM05D005082 ORTHO05D006474 2.8e-310 1067.8 529 100.0
Manes.02G091600 Manihot esculenta HOM05D005082 ORTHO05D006474 1.2e-220 770.0 476 75.8
Lj5C170T16 Lonicera japonica HOM05D005082 ORTHO05D006474 1.1e-218 763.5 493 73.8
ATR0605G166 Amborella trichopoda HOM05D005082 ORTHO05D006474 7.9e-217 757.3 493 72.8
Thecc.02G148100 Theobroma cacao HOM05D005082 ORTHO05D006474 1.3e-216 756.5 483 73.7
CiPaw.05G095000 Carya illinoinensis HOM05D005082 ORTHO05D006474 8.7e-216 753.8 476 74.8
Duzib248G1564 Durio zibethinus HOM05D005082 ORTHO05D006474 2.5e-215 752.3 483 73.1
CsaV3_7G002150 Cucumis sativus L. HOM05D005082 ORTHO05D006474 4.3e-215 751.5 482 72.6
Ciclev10028098m.g Citrus clementina HOM05D005082 ORTHO05D006474 1.3e-214 750.0 483 72.9
Cfa005396 Carpinus fangiana HOM05D005082 ORTHO05D006474 3.7e-214 748.4 469 74.8
ClCG02G003240 Citrullus lanatus HOM05D005082 ORTHO05D006474 3.7e-214 748.4 483 71.8
TAR628G0288 Trochodendron aralioides HOM05D005082 ORTHO05D006474 4.8e-214 748.0 483 73.5
Gohir.A01G011600 Gossypium hirsutum HOM05D005082 ORTHO05D006474 8.2e-214 747.3 483 71.8
PGR042G3506 Punica granatum HOM05D005082 ORTHO05D006474 1.8e-213 746.1 468 74.4
GSVIVG01023855001 Vitis vinifera HOM05D005082 ORTHO05D006474 1.8e-213 746.1 483 72.3
Gorai.002G014600 Gossypium raimondii HOM05D005082 ORTHO05D006474 3.1e-213 745.3 483 72.0
PSO210G0895 Papaver somniferum HOM05D005082 ORTHO05D006474 3.1e-213 745.3 476 72.9
Prupe.8G016800 Prunus persica HOM05D005082 ORTHO05D006474 3.1e-213 745.3 488 73.0
QL11p056821 Quercus lobata HOM05D005082 ORTHO05D006474 4.1e-213 745.0 483 73.1
Actinidia20586 Actinidia chinensis HOM05D005082 ORTHO05D006474 5.3e-213 744.6 483 72.0
RcHm_v2.0_Chr6g0277491 Rosa chinensis HOM05D005082 ORTHO05D006474 5.3e-213 744.6 484 72.3
Cpa.g.c29182.1 Carica papaya HOM05D005082 ORTHO05D006474 6.9e-213 744.2 483 73.3
Peaxi162Scf00362g00137 Petunia axillaris HOM05D005082 ORTHO05D006474 2.0e-212 742.7 476 72.9
DCAR_001519 Daucus carota HOM05D005082 ORTHO05D006474 4.5e-212 741.5 474 73.0
MELO3C015693.2 Cucumis melo HOM05D005082 ORTHO05D006474 5.9e-212 741.1 482 71.4
Hund06352 Selenicereus undatus HOM05D005082 ORTHO05D006474 7.7e-212 740.7 469 74.0
Gohir.D01G012800 Gossypium hirsutum HOM05D005082 ORTHO05D006474 1.0e-211 740.3 483 71.4
PSO675G0919 Papaver somniferum HOM05D005082 ORTHO05D006474 1.3e-211 740.0 476 72.7
MD05G1011800 Malus domestica HOM05D005082 ORTHO05D006474 1.7e-211 739.6 476 72.9
Potri.009G169700 Populus trichocarpa HOM05D005082 ORTHO05D006474 2.2e-211 739.2 476 73.3
TWI59G1375 Tripterygium wilfordii HOM05D005082 ORTHO05D006474 2.2e-211 739.2 483 72.3
Atru.BG.54.p Acer truncatum HOM05D005082 ORTHO05D006474 3.8e-211 738.4 476 72.7
Aa31LG1G17860 Aethionema arabicum HOM05D005082 ORTHO05D006474 3.8e-211 738.4 484 72.3
MBI01_g28404_MAGBIO Magnolia biondii HOM05D005082 ORTHO05D006474 6.5e-211 737.6 530 69.1
Sabra04G0140300 Salix brachista HOM05D005082 ORTHO05D006474 8.5e-211 737.3 476 72.7
Oeu006114.1 Olea europaea HOM05D005082 ORTHO05D006474 1.1e-210 736.9 483 71.6
FAN24G2999 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.4e-210 736.5 476 72.5
THA.LOC104800058 Tarenaya hassleriana HOM05D005082 ORTHO05D006474 1.4e-210 736.5 469 73.1
AL8G41310 Arabidopsis lyrata HOM05D005082 ORTHO05D006474 1.9e-210 736.1 484 71.7
CDE06G2564 Ceratophyllum demersum HOM05D005082 ORTHO05D006474 4.2e-210 734.9 493 71.2
Cc09_g10910 Coffea canephora HOM05D005082 ORTHO05D006474 5.5e-210 734.6 483 72.0
EL10Ac9g21557 Beta vulgaris HOM05D005082 ORTHO05D006474 7.2e-210 734.2 493 69.6
Eucgr.H05005 Eucalyptus grandis HOM05D005082 ORTHO05D006474 9.4e-210 733.8 476 71.6
MD10G1011800 Malus domestica HOM05D005082 ORTHO05D006474 9.4e-210 733.8 470 74.7
Sed0020521 Sechium edule HOM05D005082 ORTHO05D006474 9.4e-210 733.8 484 70.5
Dinv41859 Davidia involucrata HOM05D005082 ORTHO05D006474 1.6e-209 733.0 464 74.4
Rhsim04G0008200 Rhododendron simsii HOM05D005082 ORTHO05D006474 2.1e-209 732.6 482 70.5
FAN20G1299 Fragaria x ananassa HOM05D005082 ORTHO05D006474 2.7e-209 732.3 476 72.3
Solyc01g112290.4 Solanum lycopersicum HOM05D005082 ORTHO05D006474 2.7e-209 732.3 474 72.4
Sp2g27120 Schrenkiella parvula HOM05D005082 ORTHO05D006474 4.6e-209 731.5 489 71.0
Sopen01g054400 Solanum pennellii HOM05D005082 ORTHO05D006474 4.6e-209 731.5 474 72.4
Ah.01g017700 Amaranthus hybridus HOM05D005082 ORTHO05D006474 6.1e-209 731.1 469 72.9
Aqoxy6G02995 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 7.9e-209 730.7 483 71.6
DCAR_006224 Daucus carota HOM05D005082 ORTHO05D006474 7.9e-209 730.7 482 71.6
Glyma.07G124000 Glycine max HOM05D005082 ORTHO05D006474 7.9e-209 730.7 484 70.7
AT5G64050 Arabidopsis thaliana HOM05D005082 ORTHO05D006474 1.0e-208 730.3 484 71.1
CAN.G1645.8 Capsicum annuum HOM05D005082 ORTHO05D006474 1.0e-208 730.3 474 72.2
CARHR277960 Cardamine hirsuta HOM05D005082 ORTHO05D006474 1.4e-208 729.9 484 70.9
Migut.B00003 Erythranthe guttata HOM05D005082 ORTHO05D006474 1.8e-208 729.6 471 73.0
Carub.0008s2483 Capsella rubella HOM05D005082 ORTHO05D006474 2.3e-208 729.2 484 71.1
ECA233G3220 Erigeron canadensis HOM05D005082 ORTHO05D006474 5.1e-208 728.0 483 71.2
HanXRQChr14g0455171 Helianthus annuus HOM05D005082 ORTHO05D006474 5.1e-208 728.0 483 70.8
FAN15G2332 Fragaria x ananassa HOM05D005082 ORTHO05D006474 8.8e-208 727.2 487 70.8
MSTRG.16959 Avicennia marina HOM05D005082 ORTHO05D006474 1.1e-207 726.9 484 69.8
AUR62013197 Chenopodium quinoa HOM05D005082 ORTHO05D006474 1.1e-207 726.9 479 71.4
Glyma.03G097900 Glycine max HOM05D005082 ORTHO05D006474 1.1e-207 726.9 476 71.8
AUR62010207 Chenopodium quinoa HOM05D005082 ORTHO05D006474 1.5e-207 726.5 479 71.6
VMungo0331G1808 Vigna mungo HOM05D005082 ORTHO05D006474 2.0e-207 726.1 476 71.6
Lj3g0023171 Lotus japonicus HOM05D005082 ORTHO05D006474 2.6e-207 725.7 476 71.8
Phvul.010G038400 Phaseolus vulgaris HOM05D005082 ORTHO05D006474 7.4e-207 724.2 476 71.8
BcaB02g09792 Brassica carinata HOM05D005082 ORTHO05D006474 9.7e-207 723.8 483 70.8
BolC3t18485H Brassica oleracea HOM05D005082 ORTHO05D006474 1.7e-206 723.0 484 70.2
Ca_25889_v3 Cicer arietinum L. HOM05D005082 ORTHO05D006474 1.7e-206 723.0 476 71.4
BcaC01g02661 Brassica carinata HOM05D005082 ORTHO05D006474 2.8e-206 722.2 484 70.2
C03p62220 Brassica napus HOM05D005082 ORTHO05D006474 2.8e-206 722.2 484 70.2
SalBow1G4726 Salvia bowleyana HOM05D005082 ORTHO05D006474 2.8e-206 722.2 483 70.0
A06p30760 Brassica napus HOM05D005082 ORTHO05D006474 1.8e-205 719.5 484 70.2
arahy.Tifrunner.gnm1.ann1.44ERQ5 Arachis hypogaea HOM05D005082 ORTHO05D006474 6.9e-205 717.6 494 69.2
Lsat_1_v5_gn_8_119500 Lactuca sativa HOM05D005082 ORTHO05D006474 9.1e-205 717.2 493 69.6
Os02g0121000 Oryza sativa ssp. japonica HOM05D005082 ORTHO05D006474 1.2e-204 716.8 476 71.0
vmacro16288 Vaccinium macrocarpon HOM05D005082 ORTHO05D006474 3.4e-204 715.3 539 64.6
arahy.Tifrunner.gnm1.ann1.M18VWQ Arachis hypogaea HOM05D005082 ORTHO05D006474 1.0e-203 713.8 494 69.0
Lalb_Chr12g0210191 Lupinus albus HOM05D005082 ORTHO05D006474 2.2e-203 712.6 476 71.0
Medtr8g009900 Medicago truncatula HOM05D005082 ORTHO05D006474 1.9e-202 709.5 478 69.5
Thhalv10003868m.g Eutrema salsugineum HOM05D005082 ORTHO05D006474 3.6e-201 705.3 511 66.7
Lalb_Chr07g0194811 Lupinus albus HOM05D005082 ORTHO05D006474 3.6e-201 705.3 476 70.2
COL.COLO4_03850 Corchorus olitorius HOM05D005082 ORTHO05D006474 4.7e-201 704.9 483 69.4
TPR.G17355 Trifolium pratense HOM05D005082 ORTHO05D006474 2.6e-199 699.1 514 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3203 Anthoceros agrestis HOM05D005082 ORTHO05D006474 7.4e-199 697.6 493 66.9
Mapoly0005s0181 Marchantia polymorpha HOM05D005082 ORTHO05D006474 4.8e-198 694.9 493 66.3
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 8.2e-198 694.1 487 67.4
BraA06t26018Z Brassica rapa HOM05D005082 ORTHO05D006474 5.9e-196 688.0 502 65.9
Pp3c1_10010 Physcomitrium patens HOM05D005082 ORTHO05D006474 3.8e-187 658.7 494 64.6
Sc08g0002050 Simmondsia chinensis HOM05D005082 ORTHO05D006474 3.8e-187 658.7 412 75.0
Haze_01956 Corylus avellana HOM05D005082 ORTHO05D006474 1.8e-184 649.8 469 67.4
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 2.0e-180 636.3 492 61.2
SMO134G0063 Selaginella moellendorffii HOM05D005082 ORTHO05D006474 1.0e-179 634.0 483 62.7
Psat4g215760 Pisum sativum HOM05D005082 ORTHO05D006474 2.1e-177 626.3 444 68.5
CBR_g25940 Chara braunii HOM05D005082 ORTHO05D006474 1.2e-175 620.5 470 60.9
Nitab4.5_0001220g0040 Nicotiana tabacum HOM05D005082 ORTHO05D006474 3.8e-171 605.5 476 62.8
Nitab4.5_0010601g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 9.5e-170 600.9 476 61.6
FAN27G0598 Fragaria x ananassa HOM05D005082 ORTHO05D006474 3.9e-163 578.9 402 69.4
Atru.chr5.3580 Acer truncatum HOM05D005082 ORTHO05D006474 1.8e-160 570.1 325 80.9
FvH4_2g14910 Fragaria vesca HOM05D005082 ORTHO05D006474 1.8e-160 570.1 339 78.5
Cre07.g313700 Chlamydomonas reinhardtii HOM05D005082 ORTHO05D006474 4.4e-159 565.5 466 56.4
QL04p064927 Quercus lobata HOM05D005082 ORTHO05D006474 2.0e-156 556.6 339 77.3
CSS0015047 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 2.7e-156 556.2 358 74.3
PRCOL_00001874 Prasinoderma coloniale HOM05D005082 ORTHO05D006474 8.6e-155 551.2 468 55.3
Dinv14185 Davidia involucrata HOM05D005082 ORTHO05D006474 1.5e-151 540.4 443 61.4
MCO11G616 Micromonas commoda HOM05D005082 ORTHO05D006474 2.0e-151 540.0 453 55.8
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 9.9e-143 511.1 393 63.4
Duzib132G0508 Durio zibethinus HOM05D005082 ORTHO05D006474 2.3e-139 500.0 344 69.8
Sed0003916 Sechium edule HOM05D005082 ORTHO05D006474 5.8e-135 485.3 380 63.2
Zm00001eb208250 Zea mays HOM05D005082 ORTHO05D006474 2.6e-127 459.9 321 67.9
Zm00001eb230310 Zea mays HOM05D005082 ORTHO05D006474 3.9e-123 446.0 321 65.7
Lj9C409G5 Lonicera japonica HOM05D005082 ORTHO05D006474 1.1e-82 311.6 251 62.5
Nitab4.5_0005317g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 3.6e-68 263.5 203 61.1
Haze_26742 Corylus avellana HOM05D005082 ORTHO05D006474 5.7e-66 256.1 461 34.1
Duzib052G0849 Durio zibethinus HOM05D005082 ORTHO05D006474 7.7e-63 245.7 270 53.0
Cfa023769 Carpinus fangiana HOM05D005082 ORTHO05D006474 1.3e-54 218.4 306 36.3
Lj9C409G6 Lonicera japonica HOM05D005082 ORTHO05D006474 1.1e-53 215.3 186 55.9
RcHm_v2.0_Chr2g0162471 Rosa chinensis HOM05D005082 ORTHO05D006474 2.0e-50 204.5 202 55.4
HanXRQChr14g0432441 Helianthus annuus HOM05D005082 ORTHO05D006474 5.4e-48 196.4 106 87.7
Haze_26758 Corylus avellana HOM05D005082 ORTHO05D006474 4.0e-43 180.3 305 37.0
HPP92_019666 Vanilla planifolia HOM05D005082 ORTHO05D006474 1.0e-38 165.6 123 63.4
Aqoxy2G01868 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 1.1e-32 145.6 81 80.2
CSS0018221 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 2.1e-31 141.4 113 58.4
SGA_v2.0_scaffold104G30258 Striga asiatica HOM05D005082 ORTHO05D006474 6.0e-31 139.8 149 48.3
Pp3c2_37890 Physcomitrium patens HOM05D005082 ORTHO05D006474 7.8e-31 139.4 244 35.7
Aqoxy144s004 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 3.0e-30 137.5 329 29.5
PGR142G3202 Punica granatum HOM05D005082 ORTHO05D006474 4.3e-29 133.7 104 60.6
PGR004G1860 Punica granatum HOM05D005082 ORTHO05D006474 9.5e-29 132.5 104 59.6
Zm00001eb428990 Zea mays HOM05D005082 ORTHO05D050782 1.4e-24 118.6 58 94.8
Duzib093G0106 Durio zibethinus HOM05D005082 ORTHO05D006474 3.6e-20 104.0 62 75.8
HPP92_019667 Vanilla planifolia HOM05D005082 ORTHO05D006474 2.0e-18 98.2 56 76.8
Aa31LG6G3290 Aethionema arabicum HOM05D005082 ORTHO05D006474 9.6e-13 79.3 70 55.7
SalBow6G7034 Salvia bowleyana HOM05D005082 ORTHO05D050782 6.9e-11 73.2 103 42.7
FAN04G1942 Fragaria x ananassa HOM05D005082 ORTHO05D006474 2.6e-10 71.2 245 25.7
Cfa005395 Carpinus fangiana HOM05D005082 ORTHO05D006474 2.9e-09 67.8 35 88.6
FAN08G2453 Fragaria x ananassa HOM05D005082 ORTHO05D006474 4.9e-09 67.0 81 46.9
Lsat_1_v5_gn_8_156340 Lactuca sativa HOM05D005082 ORTHO05D006474 2.4e-08 64.7 59 45.8
SEGI_17157 Sequoiadendron giganteum HOM05D001206 ORTHO05D002068 2.4e-08 64.7 35 82.9
SEGI_37363 Sequoiadendron giganteum HOM05D000058 ORTHO05D000255 2.4e-08 64.7 35 82.9
FAN18G1553 Fragaria x ananassa HOM05D005082 ORTHO05D006474 6.7e-06 56.6 71 40.8


User provided reference genes

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