Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.0e-249 864.8 444 100.0
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 3.9e-100 369.4 339 58.1
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 5.1e-100 369.0 339 59.3
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 8.7e-100 368.2 339 58.4
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 8.7e-100 368.2 339 59.0
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.9e-99 367.1 337 59.3
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.9e-99 367.1 339 59.9
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.5e-99 366.7 399 52.4
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.3e-99 366.3 357 56.6
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.6e-99 365.5 337 58.8
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 5.6e-99 365.5 378 54.5
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 7.3e-99 365.2 339 57.8
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 7.3e-99 365.2 339 58.4
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 9.6e-99 364.8 392 55.1
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 9.6e-99 364.8 345 57.7
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.6e-98 364.0 340 58.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.6e-98 362.8 337 58.8
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 3.6e-98 362.8 388 54.1
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 4.8e-98 362.5 335 57.6
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 4.8e-98 362.5 342 57.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 8.1e-98 361.7 339 58.4
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.4e-97 360.9 339 58.4
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.4e-97 360.9 363 55.9
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.8e-97 360.5 341 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.4e-97 360.1 332 58.4
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.4e-97 360.1 336 58.6
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.4e-97 360.1 341 58.1
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 2.4e-97 360.1 342 58.5
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 3.1e-97 359.8 332 58.1
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.1e-97 359.8 346 57.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.0e-97 359.4 396 53.3
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.0e-97 359.4 346 57.5
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 4.0e-97 359.4 346 57.5
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 4.0e-97 359.4 339 57.5
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 5.3e-97 359.0 346 57.8
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 5.3e-97 359.0 339 58.1
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 6.9e-97 358.6 337 58.5
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 6.9e-97 358.6 330 59.1
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 6.9e-97 358.6 337 57.9
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 9.0e-97 358.2 336 58.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 9.0e-97 358.2 339 57.2
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 9.0e-97 358.2 338 58.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.2e-96 357.8 338 58.9
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.2e-96 357.8 328 59.1
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.2e-96 357.8 337 55.8
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.5e-96 357.5 353 56.7
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.5e-96 357.5 336 58.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.0e-96 357.1 337 56.7
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.6e-96 356.7 353 56.7
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.6e-96 356.7 363 54.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.6e-96 356.7 342 57.9
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.4e-96 356.3 337 57.6
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.4e-96 356.3 337 57.6
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.4e-96 356.3 353 56.4
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.4e-96 356.3 353 56.4
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.4e-96 356.3 353 56.4
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 4.5e-96 355.9 337 56.1
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 7.6e-96 355.1 401 51.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 7.6e-96 355.1 337 57.0
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 9.9e-96 354.8 368 54.9
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.3e-95 354.4 372 54.8
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.3e-95 354.4 340 57.9
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.7e-95 354.0 336 57.1
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.7e-95 354.0 341 56.6
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.7e-95 354.0 341 56.6
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.7e-95 354.0 337 55.8
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.7e-95 354.0 338 57.7
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.2e-95 353.6 334 56.6
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 2.9e-95 353.2 339 56.3
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 2.9e-95 353.2 338 57.1
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.8e-95 352.8 338 57.1
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.9e-95 352.4 338 55.9
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 6.4e-95 352.1 347 57.9
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 6.4e-95 352.1 336 57.1
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 8.4e-95 351.7 342 57.6
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 8.4e-95 351.7 418 49.8
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.4e-94 350.1 345 56.8
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 3.2e-94 349.7 339 55.5
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 4.2e-94 349.4 342 57.3
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 7.1e-94 348.6 336 56.2
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 7.1e-94 348.6 340 56.2
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 9.3e-94 348.2 364 54.1
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.6e-93 347.4 327 57.8
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 2.1e-93 347.1 338 56.2
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 2.7e-93 346.7 367 52.6
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 4.6e-93 345.9 350 56.0
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 3.9e-92 342.8 340 56.2
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 3.9e-92 342.8 348 55.5
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 3.9e-92 342.8 341 55.4
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 5.1e-92 342.4 393 51.4
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 5.1e-92 342.4 333 57.1
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 8.7e-92 341.7 336 56.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.5e-91 340.9 321 56.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 2.5e-91 340.1 353 54.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 4.3e-91 339.3 393 51.1
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 3.7e-90 336.3 337 54.6
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 8.1e-90 335.1 354 53.7
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-89 334.7 319 56.7
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.4e-89 334.3 328 54.9
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 9.0e-89 331.6 346 53.8
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-88 331.3 348 52.0
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.5e-88 330.9 305 57.4
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.5e-88 330.9 337 53.7
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.7e-87 327.4 339 51.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 4.2e-86 322.8 328 54.0
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.5e-86 322.4 339 54.6
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.5e-86 322.4 339 54.6
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 4.6e-85 319.3 378 48.1
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-84 317.8 327 54.1
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 3.0e-84 316.6 352 50.6
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 9.6e-83 311.6 336 52.7
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.1e-82 310.5 324 52.2
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 3.1e-81 306.6 283 57.2
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.9e-79 300.1 357 49.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-73 281.6 282 54.6
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 2.6e-72 276.9 356 47.2
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.6e-72 276.9 273 55.7
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 3.4e-72 276.6 374 46.3
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 4.5e-72 276.2 274 54.4
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.3e-71 274.6 274 56.2
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 8.8e-68 261.9 308 48.4
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.4e-64 250.0 253 54.5
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.2e-63 247.3 308 47.4
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 6.5e-63 245.7 271 52.4
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.4e-59 233.0 249 53.4
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.2e-40 171.8 217 49.3
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-34 151.4 294 37.8
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 6.6e-31 139.4 118 59.3
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-30 138.7 115 61.7
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.4e-27 127.1 104 63.5
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.2e-25 119.0 104 57.7
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.7e-23 114.8 113 52.2
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.9e-23 114.0 170 38.8
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.7e-21 106.7 155 39.4
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 3.4e-19 100.5 307 30.9
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.6e-16 91.7 70 65.7
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.7e-15 88.2 129 47.3
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.6e-13 81.6 75 53.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 5.8e-11 73.2 186 31.7
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.1e-09 67.0 84 47.6
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.6e-07 59.7 43 69.8


User provided reference genes

Program Settings