Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 2.5e-144 515.4 253 100.0
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 1.0e-73 280.8 223 57.8
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 5.2e-73 278.5 225 59.6
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.1e-72 277.3 225 59.1
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 1.5e-72 276.9 223 59.2
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 2.0e-72 276.6 225 59.1
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 2.0e-72 276.6 223 58.3
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 2.6e-72 276.2 246 54.1
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 2.6e-72 276.2 223 58.3
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 2.6e-72 276.2 224 59.8
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 7.4e-72 274.6 232 56.0
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 1.7e-71 273.5 225 58.2
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 3.7e-71 272.3 223 56.5
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 8.2e-71 271.2 224 54.9
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 8.2e-71 271.2 223 56.5
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 8.2e-71 271.2 223 56.5
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 8.2e-71 271.2 224 57.1
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.1e-70 270.8 223 56.1
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 1.4e-70 270.4 225 59.1
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 1.4e-70 270.4 223 57.4
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 1.4e-70 270.4 224 57.1
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 1.4e-70 270.4 223 56.1
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 1.8e-70 270.0 231 55.4
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 2.4e-70 269.6 223 56.1
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 3.1e-70 269.2 223 57.8
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 3.1e-70 269.2 224 56.7
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 4.1e-70 268.9 224 55.4
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 7.0e-70 268.1 224 57.1
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 7.0e-70 268.1 223 57.4
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 7.0e-70 268.1 223 57.4
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 9.1e-70 267.7 224 57.6
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 1.2e-69 267.3 224 57.1
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 1.2e-69 267.3 224 54.5
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.2e-69 267.3 224 56.7
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.2e-69 267.3 224 56.7
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 1.2e-69 267.3 223 57.4
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 1.2e-69 267.3 223 57.0
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 1.6e-69 266.9 224 55.8
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 1.6e-69 266.9 224 56.2
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 1.6e-69 266.9 226 58.4
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.0e-69 266.5 224 56.2
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 2.0e-69 266.5 223 58.3
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.6e-69 266.2 224 56.2
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 2.6e-69 266.2 223 56.1
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 3.5e-69 265.8 225 55.6
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 3.5e-69 265.8 224 55.8
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 3.5e-69 265.8 224 57.1
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 4.5e-69 265.4 223 56.5
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 5.9e-69 265.0 223 57.0
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 5.9e-69 265.0 226 57.1
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 7.7e-69 264.6 223 57.0
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 1.0e-68 264.2 224 54.9
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 1.0e-68 264.2 224 53.1
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 1.0e-68 264.2 224 53.6
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 1.0e-68 264.2 225 55.6
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 1.0e-68 264.2 223 56.5
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 1.0e-68 264.2 223 55.2
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.0e-68 264.2 223 57.4
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 1.3e-68 263.8 225 54.2
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 1.3e-68 263.8 223 53.8
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 1.7e-68 263.5 223 54.7
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 2.2e-68 263.1 224 53.1
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 2.9e-68 262.7 225 56.9
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 2.9e-68 262.7 223 55.6
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 2.9e-68 262.7 223 56.5
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 3.8e-68 262.3 224 53.1
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 3.8e-68 262.3 223 55.6
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 5.0e-68 261.9 224 56.2
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 8.5e-68 261.2 225 56.4
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 8.5e-68 261.2 223 56.1
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 8.5e-68 261.2 225 54.2
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 1.1e-67 260.8 224 55.4
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 2.5e-67 259.6 223 57.0
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 3.2e-67 259.2 223 53.4
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 3.2e-67 259.2 223 56.5
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 5.5e-67 258.5 223 52.9
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 5.5e-67 258.5 224 55.8
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 7.2e-67 258.1 223 52.9
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 7.2e-67 258.1 223 54.7
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 9.4e-67 257.7 225 53.8
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 9.4e-67 257.7 224 55.8
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 9.4e-67 257.7 224 54.5
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 2.1e-66 256.5 224 54.9
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.7e-66 256.1 224 55.4
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 3.6e-66 255.8 224 56.2
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 4.7e-66 255.4 223 54.7
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 4.7e-66 255.4 223 53.8
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 8.0e-66 254.6 224 54.0
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 8.0e-66 254.6 227 53.3
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 1.0e-65 254.2 224 52.2
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 1.4e-65 253.8 223 52.0
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 1.4e-65 253.8 223 56.1
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 1.4e-65 253.8 223 55.2
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 1.8e-65 253.4 225 52.0
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 1.8e-65 253.4 224 55.4
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 2.3e-65 253.1 223 52.5
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 3.0e-65 252.7 224 53.6
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 4.0e-65 252.3 224 54.5
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 4.0e-65 252.3 228 54.8
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 5.2e-65 251.9 228 54.8
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 6.7e-65 251.5 225 53.8
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 8.8e-65 251.1 224 54.9
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 1.5e-64 250.4 224 54.9
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 2.0e-64 250.0 224 53.6
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 3.3e-64 249.2 223 54.7
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 4.4e-64 248.8 224 53.6
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 4.4e-64 248.8 223 54.7
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 7.5e-64 248.1 223 54.7
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 1.3e-63 247.3 225 53.3
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 3.7e-63 245.7 229 53.7
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 6.3e-63 245.0 224 51.8
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.4e-62 243.8 224 52.2
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 4.1e-62 242.3 224 54.5
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 4.1e-62 242.3 199 57.3
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 7.0e-62 241.5 224 49.1
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 1.2e-61 240.7 223 51.6
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 2.7e-61 239.6 223 49.8
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 5.0e-60 235.3 211 53.6
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.1e-59 234.2 224 53.1
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 3.2e-59 232.6 224 50.9
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 2.7e-58 229.6 227 50.2
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 8.0e-58 228.0 200 54.0
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 7.5e-56 221.5 233 50.6
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 1.2e-48 197.6 261 40.2
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 4.9e-47 192.2 161 55.9
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 1.8e-46 190.3 134 64.9
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 4.4e-40 169.1 158 50.0
Lalb_Chr16g0388271 Lupinus albus HOM05D004035 ORTHO05D004631 5.0e-36 155.6 152 50.0
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 1.5e-24 117.5 83 62.7
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 1.9e-22 110.5 72 66.7
HPP92_004246 Vanilla planifolia HOM05D004035 ORTHO05D004631 2.3e-20 103.6 69 69.6
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 8.9e-17 91.7 54 72.2
Cfa020838 Carpinus fangiana HOM05D004035 ORTHO05D004631 1.2e-16 91.3 114 42.1
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 6.4e-15 85.5 53 67.9
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 5.4e-14 82.4 226 25.2
Cre06.g278124 Chlamydomonas reinhardtii HOM05D004035 ORTHO05D004631 1.3e-12 77.8 230 30.4
TPR.G13568 Trifolium pratense HOM05D004035 ORTHO05D004631 6.2e-10 68.9 100 38.0
Cfa025411 Carpinus fangiana HOM05D004035 ORTHO05D004631 4.0e-09 66.2 198 27.3
SEGI_22286 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 1.2e-08 64.7 76 50.0
Cfa008017 Carpinus fangiana HOM05D004035 ORTHO05D004631 7.6e-08 62.0 45 55.6
Os04g0389901 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 3.8e-07 59.7 47 55.3
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 3.2e-06 56.6 37 62.2


User provided reference genes

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