Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 0.0e+00 1075.8 549 100.0
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 6.8e-179 631.3 460 67.8
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 2.7e-175 619.4 461 65.5
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 6.0e-175 618.2 461 65.1
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 2.3e-174 616.3 464 66.6
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 1.9e-173 613.2 461 65.1
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 2.5e-173 612.8 461 65.3
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 3.3e-173 612.5 461 65.1
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 7.3e-173 611.3 460 66.5
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 1.2e-172 610.5 465 66.2
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 2.8e-172 609.4 459 65.4
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 2.8e-172 609.4 462 65.4
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 2.8e-172 609.4 460 64.8
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 4.7e-172 608.6 464 65.9
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 4.7e-172 608.6 465 66.2
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 6.2e-172 608.2 461 64.9
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 6.2e-172 608.2 465 64.3
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 8.0e-172 607.8 461 64.9
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 8.0e-172 607.8 463 66.3
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 8.0e-172 607.8 461 65.1
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 1.1e-171 607.4 460 65.9
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 2.3e-171 606.3 461 64.2
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 4.0e-171 605.5 463 65.0
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 4.0e-171 605.5 461 65.3
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 6.8e-171 604.7 461 64.9
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 8.9e-171 604.4 462 64.9
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 8.9e-171 604.4 463 64.6
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 8.9e-171 604.4 467 63.8
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 1.5e-170 603.6 463 65.0
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 1.5e-170 603.6 464 64.7
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 2.6e-170 602.8 463 64.8
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 2.6e-170 602.8 463 64.8
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 2.6e-170 602.8 461 65.3
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 3.4e-170 602.4 461 64.4
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 3.4e-170 602.4 461 65.1
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 3.4e-170 602.4 461 63.8
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 3.4e-170 602.4 461 64.2
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 5.8e-170 601.7 461 64.9
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 7.5e-170 601.3 462 63.9
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 9.8e-170 600.9 461 64.0
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 1.7e-169 600.1 527 59.6
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 1.7e-169 600.1 461 64.2
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 2.2e-169 599.7 462 63.9
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 2.2e-169 599.7 461 64.2
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 2.9e-169 599.4 461 64.0
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 3.7e-169 599.0 461 65.5
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 6.4e-169 598.2 460 64.1
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 6.4e-169 598.2 460 64.1
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 1.1e-168 597.4 461 63.8
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 1.9e-168 596.7 461 64.2
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 1.9e-168 596.7 461 64.4
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 1.9e-168 596.7 461 64.4
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 3.2e-168 595.9 461 64.4
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 5.4e-168 595.1 461 63.6
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 9.2e-168 594.3 462 64.1
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 9.2e-168 594.3 461 63.8
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 1.2e-167 594.0 463 64.1
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 1.2e-167 594.0 463 64.1
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 1.2e-167 594.0 462 64.3
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 1.6e-167 593.6 464 63.6
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 2.1e-167 593.2 463 63.9
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 3.5e-167 592.4 461 63.8
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 4.6e-167 592.0 463 63.9
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 4.6e-167 592.0 463 63.9
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 4.6e-167 592.0 463 63.9
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 4.6e-167 592.0 462 64.1
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 1.0e-166 590.9 461 63.8
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 1.0e-166 590.9 462 63.6
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 1.7e-166 590.1 461 64.6
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 2.3e-166 589.7 460 63.3
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 3.0e-166 589.3 461 64.0
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 3.0e-166 589.3 461 63.3
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 5.1e-166 588.6 461 63.3
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 6.6e-166 588.2 461 63.3
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 1.1e-165 587.4 462 63.4
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 1.5e-165 587.0 465 63.2
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 1.9e-165 586.6 462 63.6
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 1.9e-165 586.6 528 58.0
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 5.6e-165 585.1 461 63.3
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 7.3e-165 584.7 461 63.3
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 1.2e-164 583.9 461 63.1
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 1.6e-164 583.6 461 63.3
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 2.1e-164 583.2 462 63.0
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 2.8e-164 582.8 464 62.3
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 3.6e-164 582.4 462 63.2
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 1.1e-163 580.9 467 62.5
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 2.3e-163 579.7 461 62.9
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 2.3e-163 579.7 481 60.7
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 2.3e-163 579.7 461 62.9
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 2.3e-163 579.7 467 63.6
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 8.9e-163 577.8 465 62.8
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 1.2e-162 577.4 461 61.4
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 1.5e-162 577.0 461 63.3
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 3.4e-162 575.9 463 62.6
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 2.2e-161 573.2 486 60.3
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 2.9e-161 572.8 461 62.0
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 3.7e-161 572.4 461 61.6
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 8.3e-161 571.2 463 62.0
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 1.4e-160 570.5 461 61.2
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.4e-160 570.5 461 62.0
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.2e-159 567.4 448 62.7
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 8.6e-158 561.2 474 60.3
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 5.2e-155 552.0 461 60.3
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 2.6e-154 549.7 466 59.9
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 6.4e-153 545.0 449 61.0
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.0e-150 537.7 461 59.9
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 1.7e-150 537.0 465 58.5
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 1.5e-146 523.9 488 54.7
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 2.6e-146 523.1 491 57.0
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 6.4e-145 518.5 464 58.8
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 2.0e-138 496.9 413 61.3
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 6.4e-137 491.9 410 60.7
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 1.4e-136 490.7 461 56.8
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 4.6e-135 485.7 449 57.0
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 7.4e-133 478.4 415 58.8
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 1.5e-130 470.7 465 53.8
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 5.8e-122 442.2 459 51.6
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 4.6e-119 432.6 396 56.1
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 3.9e-118 429.5 402 55.7
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 1.3e-116 424.5 449 49.7
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 1.4e-115 421.0 472 49.2
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 2.3e-110 403.7 378 55.0
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 8.8e-110 401.7 462 48.9
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 3.1e-107 393.3 485 47.2
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 7.0e-99 365.5 249 72.7
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 2.0e-93 347.4 355 53.2
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 2.7e-79 300.4 261 57.1
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 5.7e-77 292.7 243 63.8
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 7.8e-58 229.2 272 46.3
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 5.6e-56 223.0 181 60.8
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 6.0e-50 203.0 201 56.2
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 4.0e-46 190.3 382 34.3
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 9.9e-45 185.7 367 35.4
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 1.1e-38 165.6 196 47.4
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 6.2e-31 139.8 126 57.1
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 2.9e-28 131.0 120 56.7
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 1.2e-26 125.6 443 27.1
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 5.1e-25 120.2 182 42.3
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 2.4e-22 111.3 78 70.5
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 6.9e-22 109.8 107 53.3
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.7e-18 97.8 57 73.7
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 1.5e-16 92.0 89 55.1
Lsat_1_v5_gn_8_47460 Lactuca sativa HOM05D003523 ORTHO05D004021 5.1e-09 67.0 58 56.9
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.1e-08 65.9 104 44.2


User provided reference genes

Program Settings