Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0143700 Rhododendron simsii HOM05D000104 ORTHO05D028418 1.6e-73 279.3 137 100.0
Rhsim02G0169000 Rhododendron simsii HOM05D000104 ORTHO05D006385 4.0e-11 72.0 39 89.7
vmacro11005 Vaccinium macrocarpon HOM05D000104 ORTHO05D006385 3.4e-10 68.9 39 87.2
Hma1.2p1_0181F.1_g079940 Hydrangea macrophylla HOM05D000104 ORTHO05D028418 3.1e-08 62.4 46 71.7
CSS0049241 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006385 4.1e-08 62.0 38 81.6
Actinidia33653 Actinidia chinensis HOM05D000104 ORTHO05D006385 5.4e-08 61.6 38 81.6
Lj2C344G7 Lonicera japonica HOM05D000104 ORTHO05D006385 1.2e-07 60.5 38 81.6
QL11p013542 Quercus lobata HOM05D000104 ORTHO05D006385 1.2e-07 60.5 40 77.5
Duzib132G0144 Durio zibethinus HOM05D000104 ORTHO05D006385 2.0e-07 59.7 38 76.3
CiPaw.09G075000 Carya illinoinensis HOM05D000104 ORTHO05D006385 2.7e-07 59.3 38 78.9
Duzib052G0523 Durio zibethinus HOM05D000104 ORTHO05D006385 2.7e-07 59.3 38 76.3
TWI15G0050 Tripterygium wilfordii HOM05D000104 ORTHO05D006385 3.5e-07 58.9 38 76.3
PGR042G0503 Punica granatum HOM05D000104 ORTHO05D006385 4.5e-07 58.5 38 76.3
CANSAT35G1593 Cannabis sativa HOM05D000104 ORTHO05D006385 5.9e-07 58.2 38 76.3
Cc09_g05810 Coffea canephora HOM05D000104 ORTHO05D006385 5.9e-07 58.2 38 76.3
HanXRQChr12g0381521 Helianthus annuus HOM05D000104 ORTHO05D006385 5.9e-07 58.2 38 78.9
MD10G1229800 Malus domestica HOM05D000104 ORTHO05D006385 5.9e-07 58.2 38 76.3
GSVIVG01012117001 Vitis vinifera HOM05D000104 ORTHO05D006385 5.9e-07 58.2 38 76.3
Cfa000689 Carpinus fangiana HOM05D000104 ORTHO05D006385 7.7e-07 57.8 38 76.3
Haze_06104 Corylus avellana HOM05D000104 ORTHO05D006385 7.7e-07 57.8 38 76.3
Migut.E00892 Erythranthe guttata HOM05D000104 ORTHO05D006385 7.7e-07 57.8 38 76.3
Migut.E01638 Erythranthe guttata HOM05D000104 ORTHO05D006385 7.7e-07 57.8 38 76.3
Glyma.05G131500 Glycine max HOM05D000104 ORTHO05D006385 7.7e-07 57.8 38 73.7
Potri.001G123400 Populus trichocarpa HOM05D000104 ORTHO05D006385 7.7e-07 57.8 38 78.9
Potri.003G110100 Populus trichocarpa HOM05D000104 ORTHO05D006385 7.7e-07 57.8 38 78.9
Sabra03G0076300 Salix brachista HOM05D000104 ORTHO05D006385 7.7e-07 57.8 38 78.9
Nitab4.5_0006786g0010 Nicotiana tabacum HOM05D000104 ORTHO05D006385 1.0e-06 57.4 38 78.9
Solyc02g068560.3 Solanum lycopersicum HOM05D000104 ORTHO05D006385 1.0e-06 57.4 38 76.3
Sopen02g017710 Solanum pennellii HOM05D000104 ORTHO05D006385 1.0e-06 57.4 38 76.3
Thecc.02G006500 Theobroma cacao HOM05D000104 ORTHO05D006385 1.0e-06 57.4 38 73.7
AUR62042116 Chenopodium quinoa HOM05D000104 ORTHO05D006385 1.3e-06 57.0 38 76.3
FvH4_3g12610 Fragaria vesca HOM05D000104 ORTHO05D006385 1.3e-06 57.0 38 76.3
FAN16G3696 Fragaria x ananassa HOM05D000104 ORTHO05D006385 1.3e-06 57.0 38 76.3
FAN21G0261 Fragaria x ananassa HOM05D000104 ORTHO05D006385 1.3e-06 57.0 38 76.3
FAN25G1943 Fragaria x ananassa HOM05D000104 ORTHO05D006385 1.3e-06 57.0 38 76.3
RcHm_v2.0_Chr5g0020581 Rosa chinensis HOM05D000104 ORTHO05D006385 1.3e-06 57.0 38 76.3
AUR62040328 Chenopodium quinoa HOM05D000104 ORTHO05D006385 1.7e-06 56.6 41 70.7
Duzib248G0971 Durio zibethinus HOM05D000104 ORTHO05D006385 1.7e-06 56.6 38 73.7
Manes.16G060500 Manihot esculenta HOM05D000104 ORTHO05D006385 1.7e-06 56.6 40 72.5
Atru.chr10.483 Acer truncatum HOM05D000104 ORTHO05D006385 2.3e-06 56.2 38 76.3
ClCG01G025670 Citrullus lanatus HOM05D000104 ORTHO05D006385 2.3e-06 56.2 38 76.3
CsaV3_6G052880 Cucumis sativus L. HOM05D000104 ORTHO05D006385 2.3e-06 56.2 38 76.3
TWI63G1682 Tripterygium wilfordii HOM05D000104 ORTHO05D006385 2.3e-06 56.2 38 71.1
arahy.Tifrunner.gnm1.ann1.AWTX9V Arachis hypogaea HOM05D000104 ORTHO05D006385 2.9e-06 55.8 51 62.7
arahy.Tifrunner.gnm1.ann1.VH4LBD Arachis hypogaea HOM05D000104 ORTHO05D006385 2.9e-06 55.8 51 62.7
MSTRG.16362 Avicennia marina HOM05D000104 ORTHO05D006385 2.9e-06 55.8 38 68.4
COL.COLO4_17640 Corchorus olitorius HOM05D000104 ORTHO05D006385 2.9e-06 55.8 38 71.1
MELO3C007018.2 Cucumis melo HOM05D000104 ORTHO05D006385 2.9e-06 55.8 38 76.3
Glyma.08G086100 Glycine max HOM05D000104 ORTHO05D006385 2.9e-06 55.8 38 71.1
Phvul.002G191300 Phaseolus vulgaris HOM05D000104 ORTHO05D006385 3.8e-06 55.5 38 71.1
VMungo0251G0392 Vigna mungo HOM05D000104 ORTHO05D006385 3.8e-06 55.5 38 71.1
Ca_18254_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006385 5.0e-06 55.1 38 71.1
Dinv09066 Davidia involucrata HOM05D000104 ORTHO05D006385 5.0e-06 55.1 38 73.7
Eucgr.E04303 Eucalyptus grandis HOM05D000104 ORTHO05D006385 5.0e-06 55.1 38 73.7
Prupe.4G114900 Prunus persica HOM05D000104 ORTHO05D006385 5.0e-06 55.1 38 73.7
Cpa.g.sc30.142 Carica papaya HOM05D000104 ORTHO05D006385 6.6e-06 54.7 38 71.1
Ciclev10014010m.g Citrus clementina HOM05D000104 ORTHO05D006385 6.6e-06 54.7 38 73.7
Lsat_1_v5_gn_4_139440 Lactuca sativa HOM05D000104 ORTHO05D006385 6.6e-06 54.7 36 77.8
MD05G1249300 Malus domestica HOM05D000104 ORTHO05D006385 6.6e-06 54.7 38 73.7
Sabra01G0095100 Salix brachista HOM05D000104 ORTHO05D006385 6.6e-06 54.7 36 77.8
Gohir.A12G048001 Gossypium hirsutum HOM05D000104 ORTHO05D006385 8.6e-06 54.3 38 71.1
Gohir.D12G046800 Gossypium hirsutum HOM05D000104 ORTHO05D006385 8.6e-06 54.3 38 71.1
Gorai.008G049300 Gossypium raimondii HOM05D000104 ORTHO05D006385 8.6e-06 54.3 38 71.1
HanXRQChr14g0440251 Helianthus annuus HOM05D000104 ORTHO05D006385 8.6e-06 54.3 36 75.0


User provided reference genes

Program Settings