Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 0.0e+00 1260.4 631 100.0
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 0.0e+00 1239.2 675 93.5
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 5.4e-297 1023.8 656 80.6
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 3.5e-296 1021.1 654 81.0
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 8.6e-295 1016.5 649 80.0
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.5e-294 1015.8 649 80.0
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 7.6e-291 1003.4 628 81.5
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.4e-289 998.4 592 84.0
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 3.2e-289 998.0 648 78.2
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 5.4e-289 997.3 649 78.0
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 7.1e-289 996.9 646 78.2
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 9.2e-289 996.5 649 78.9
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 9.2e-289 996.5 645 78.0
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.6e-288 995.7 617 81.5
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.1e-288 995.3 654 78.0
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 7.8e-288 993.4 601 82.5
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 7.8e-288 993.4 644 77.5
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.7e-287 992.3 639 78.7
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.9e-286 988.8 642 78.3
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.9e-286 988.8 647 78.4
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.9e-286 988.8 645 77.7
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.0e-284 981.1 648 76.5
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 6.9e-284 980.3 648 76.2
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 9.0e-284 979.9 591 82.9
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.5e-283 979.2 641 77.1
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.0e-283 978.8 610 79.3
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 4.4e-283 977.6 647 76.0
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 4.4e-283 977.6 653 76.3
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 9.9e-283 976.5 636 76.7
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.7e-282 975.7 641 76.4
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.9e-282 974.9 641 77.5
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 6.4e-282 973.8 618 79.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 8.4e-282 973.4 638 77.9
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.1e-281 973.0 645 76.7
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 4.2e-281 971.1 659 76.2
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 4.2e-281 971.1 641 76.6
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 4.2e-281 971.1 662 75.5
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 5.4e-281 970.7 653 76.7
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 5.4e-281 970.7 606 79.9
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 7.1e-281 970.3 647 76.2
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.3e-281 969.9 649 75.8
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.6e-280 969.1 645 76.9
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.1e-280 968.8 650 76.6
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 3.5e-280 968.0 609 79.3
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.6e-280 967.6 636 77.2
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 4.6e-280 967.6 592 81.2
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 6.0e-280 967.2 630 77.5
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 6.0e-280 967.2 633 76.9
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 7.8e-280 966.8 640 75.5
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 7.8e-280 966.8 640 77.0
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.3e-279 966.1 642 76.6
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.3e-279 966.1 609 79.1
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.7e-279 965.7 605 79.5
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.3e-279 965.3 640 76.7
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 3.0e-279 964.9 609 79.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 3.9e-279 964.5 633 77.1
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 3.9e-279 964.5 598 79.9
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 5.1e-279 964.1 636 76.3
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 6.6e-279 963.8 630 78.1
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.5e-278 962.6 654 75.4
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.5e-278 961.8 642 74.9
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.5e-278 961.8 642 74.9
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.3e-278 961.1 591 81.4
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.3e-278 960.3 642 76.8
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 7.3e-278 960.3 648 74.8
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 7.3e-278 960.3 635 75.3
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 9.6e-278 959.9 638 75.4
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.1e-277 958.7 640 75.8
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 8.1e-277 956.8 640 75.8
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 8.1e-277 956.8 634 77.4
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 1.1e-276 956.4 641 75.8
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.4e-276 956.1 643 75.4
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.8e-276 955.7 591 80.9
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 4.0e-276 954.5 638 75.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 5.3e-276 954.1 599 79.1
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.3e-276 954.1 641 76.0
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 6.9e-276 953.7 615 79.2
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 9.0e-276 953.4 640 76.9
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.2e-275 953.0 617 77.8
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.6e-275 951.8 648 75.2
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.4e-275 951.4 650 75.2
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.3e-274 949.5 631 75.6
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 3.8e-274 948.0 627 76.4
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 4.9e-274 947.6 645 75.2
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 6.4e-274 947.2 645 75.0
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 6.4e-274 947.2 621 77.1
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.1e-273 946.4 644 74.8
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.9e-273 945.7 607 77.3
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 3.2e-273 944.9 648 74.7
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 3.2e-273 944.9 645 75.3
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.2e-273 944.5 640 74.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 9.3e-273 943.3 628 76.4
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.2e-272 943.0 650 74.3
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.6e-272 942.6 641 75.0
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.7e-272 941.8 645 75.0
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.7e-272 941.8 645 75.0
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 3.5e-272 941.4 645 74.1
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 3.5e-272 941.4 631 76.1
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 6.0e-272 940.6 646 74.0
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 3.0e-271 938.3 645 74.6
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 3.0e-271 938.3 645 74.6
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 5.1e-271 937.6 651 73.3
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.5e-270 935.3 659 72.5
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.3e-269 932.9 640 73.3
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.3e-269 932.9 641 74.4
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.3e-269 932.9 641 74.4
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 1.6e-269 932.6 645 74.0
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 8.1e-269 930.2 560 82.9
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 2.4e-268 928.7 641 73.9
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.5e-264 914.8 615 74.6
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 9.6e-262 906.7 645 73.8
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 3.1e-260 901.7 610 73.3
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.4e-259 898.3 632 71.2
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.8e-259 897.5 589 77.6
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.2e-258 895.6 645 72.9
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.8e-258 894.8 591 76.0
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 8.7e-255 883.6 572 77.6
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 4.5e-251 871.3 590 71.4
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.7e-246 853.6 560 76.1
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 8.2e-245 850.5 592 70.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 4.5e-243 844.7 652 68.9
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.4e-235 818.5 645 67.8
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.2e-234 815.8 657 65.8
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 7.0e-228 794.3 590 65.9
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 3.5e-227 792.0 610 64.9
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 4.4e-222 775.0 528 75.2
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 7.7e-219 764.2 520 73.1
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.7e-214 748.0 428 89.7
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 2.7e-211 739.2 489 76.9
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 6.6e-210 734.6 466 79.0
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 3.3e-209 732.3 528 69.5
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 8.0e-208 727.6 585 62.2
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.9e-205 718.4 459 78.4
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.1e-204 715.3 523 71.1
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 2.5e-201 706.1 466 75.5
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 8.3e-197 691.0 598 58.4
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.4e-196 689.5 455 76.0
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 2.4e-164 583.2 466 65.2
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.4e-164 583.2 612 51.3
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.9e-156 557.0 312 87.2
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 5.8e-142 508.8 392 69.4
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 6.3e-120 435.6 372 64.5
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 5.0e-117 426.0 228 87.7
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.7e-96 357.8 310 60.6
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.1e-87 328.6 249 67.1
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.1e-84 318.5 201 81.6
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 3.0e-77 293.9 210 74.8
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 1.9e-71 274.6 589 31.9
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.4e-63 247.7 175 72.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 2.0e-57 228.0 131 80.9
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 2.2e-56 224.6 132 78.8
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 2.1e-54 218.0 126 81.7
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.3e-53 215.3 184 65.2
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 2.8e-51 207.6 116 89.7
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.4e-47 195.3 114 78.1
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.4e-47 195.3 115 80.0
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.6e-45 186.4 105 81.9
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.9e-44 184.9 125 72.0
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 5.6e-44 183.3 177 60.5
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.6e-43 180.6 115 75.7
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 4.5e-41 173.7 106 84.0
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 3.2e-39 167.5 213 50.2
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.7e-38 164.5 123 68.3
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.1e-34 151.0 108 73.1
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.1e-26 125.9 61 96.7
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.2e-22 112.5 149 47.0
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 4.6e-22 110.5 70 71.4
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 6.9e-18 96.7 245 31.0
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 6.9e-18 96.7 81 66.7
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.3e-16 92.4 180 30.6
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.6e-14 84.3 50 78.0
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 5.1e-13 80.5 67 56.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 2.4e-10 71.6 75 58.7


User provided reference genes

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