Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.1e-176 621.3 321 100.0
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.0e-29 134.0 82 89.0
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 3.4e-29 133.3 82 87.8
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 7.1e-27 125.6 81 84.0
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.6e-26 124.4 82 81.7
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 2.1e-26 124.0 84 77.4
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 8.7e-25 118.6 82 75.6
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 9.0e-22 108.6 82 76.8
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 5.8e-21 105.9 82 72.0
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 1.7e-20 104.4 83 67.5
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.2e-20 104.0 82 70.7
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 4.9e-20 102.8 82 72.0
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 1.4e-19 101.3 83 65.1
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 7.1e-19 99.0 83 65.1
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 9.3e-19 98.6 82 67.1
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 3.5e-18 96.7 83 63.9
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 7.8e-18 95.5 82 63.4
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.0e-17 95.1 82 63.4
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 1.7e-17 94.4 82 65.9
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 2.3e-17 94.0 82 62.2
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 5.1e-17 92.8 82 62.2
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 5.1e-17 92.8 82 61.0
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 5.1e-17 92.8 82 61.0
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 1.5e-16 91.3 82 59.8
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 1.5e-16 91.3 80 60.0
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 1.9e-16 90.9 82 63.4
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 4.3e-16 89.7 82 64.6
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 1.3e-15 88.2 89 57.3
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 3.6e-15 86.7 92 55.4
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 3.6e-15 86.7 92 56.5
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 4.8e-15 86.3 90 56.7
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.1e-14 85.1 89 58.4
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 1.1e-14 85.1 90 55.6
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 1.1e-14 85.1 89 57.3
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 1.4e-14 84.7 89 58.4
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.4e-14 84.7 89 58.4
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.4e-14 84.7 89 58.4
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.4e-14 84.7 82 58.5
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.4e-14 84.7 82 58.5
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 4.0e-14 83.2 82 54.9
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 4.0e-14 83.2 90 53.3
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 5.3e-14 82.8 85 56.5
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 6.9e-14 82.4 84 59.5
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 9.0e-14 82.0 91 57.1
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 1.2e-13 81.6 90 54.4
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 1.2e-13 81.6 89 56.2
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.5e-13 81.3 88 55.7
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.0e-13 80.9 89 56.2
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 2.0e-13 80.9 89 53.9
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 3.4e-13 80.1 88 58.0
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 3.4e-13 80.1 89 55.1
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 4.5e-13 79.7 91 52.7
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 5.8e-13 79.3 92 50.0
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 7.6e-13 79.0 89 53.9
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 9.9e-13 78.6 91 52.7
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.3e-12 78.2 92 51.1
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 1.3e-12 78.2 88 56.8
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 2.2e-12 77.4 87 49.4
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 3.8e-12 76.6 89 51.7
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 3.8e-12 76.6 89 56.2
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 4.9e-12 76.3 92 45.7
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 4.9e-12 76.3 89 52.8
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 6.4e-12 75.9 91 50.5
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 8.4e-12 75.5 89 52.8
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 8.4e-12 75.5 88 52.3
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.1e-11 75.1 109 45.0
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 1.4e-11 74.7 89 51.7
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 1.4e-11 74.7 91 53.8
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.9e-11 74.3 89 56.2
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 2.4e-11 73.9 89 50.6
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 2.4e-11 73.9 91 51.6
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 3.2e-11 73.6 89 51.7
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 5.4e-11 72.8 92 53.3
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 7.1e-11 72.4 92 52.2
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 1.2e-10 71.6 91 53.8
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.2e-10 71.6 87 46.0
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.6e-10 71.2 88 50.0
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.6e-10 71.2 91 51.6
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 2.7e-10 70.5 93 50.5
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 2.7e-10 70.5 93 50.5
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 2.7e-10 70.5 91 49.5
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 2.7e-10 70.5 89 50.6
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 3.5e-10 70.1 91 53.8
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 4.6e-10 69.7 95 45.3
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 4.6e-10 69.7 91 49.5
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 4.6e-10 69.7 93 49.5
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 4.6e-10 69.7 91 52.7
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 4.6e-10 69.7 91 50.5
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 4.6e-10 69.7 92 50.0
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 6.0e-10 69.3 91 47.3
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 6.0e-10 69.3 93 50.5
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 6.0e-10 69.3 91 50.5
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 1.3e-09 68.2 88 50.0
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.8e-09 67.8 95 43.2
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 1.8e-09 67.8 88 50.0
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 2.3e-09 67.4 89 49.4
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.3e-09 67.4 95 43.2
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 2.3e-09 67.4 89 48.3
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 3.0e-09 67.0 91 51.6
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 3.0e-09 67.0 91 52.7
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 3.9e-09 66.6 92 47.8
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 3.9e-09 66.6 90 47.8
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 1.9e-08 64.3 89 46.1
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 1.9e-08 64.3 89 46.1
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 1.9e-08 64.3 88 46.6
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 2.5e-08 63.9 89 46.1
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 3.3e-08 63.5 89 47.2
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 4.3e-08 63.2 92 48.9
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 4.3e-08 63.2 92 45.7
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 9.6e-08 62.0 88 45.5
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 1.6e-07 61.2 93 47.3
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 2.4e-06 57.4 94 45.7
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.4e-06 57.4 92 37.0


User provided reference genes

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