Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0048900 Rhododendron simsii HOM05D003302 ORTHO05D003785 2.0e-135 485.7 236 100.0
Rhsim04G0067200 Rhododendron simsii HOM05D003302 ORTHO05D003785 7.1e-101 370.9 284 70.8
vmacro00359 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 2.3e-99 365.9 284 70.1
Actinidia03397 Actinidia chinensis HOM05D003302 ORTHO05D003785 3.5e-92 342.0 284 65.5
DCAR_005601 Daucus carota HOM05D003302 ORTHO05D003785 4.1e-88 328.6 284 62.3
Dinv28907 Davidia involucrata HOM05D003302 ORTHO05D003785 1.0e-86 323.9 284 63.4
Atru.chr6.1790 Acer truncatum HOM05D003302 ORTHO05D003785 1.1e-85 320.5 277 61.7
Sed0026531 Sechium edule HOM05D003302 ORTHO05D003785 1.4e-85 320.1 283 62.2
Potri.001G147801 Populus trichocarpa HOM05D003302 ORTHO05D003785 5.5e-85 318.2 282 61.3
Potri.003G086801 Populus trichocarpa HOM05D003302 ORTHO05D003785 2.1e-84 316.2 282 61.7
QL12p007349 Quercus lobata HOM05D003302 ORTHO05D003785 2.7e-84 315.8 279 62.0
Gohir.A03G002901 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.8e-83 313.2 283 60.1
Sabra03G0056500 Salix brachista HOM05D003302 ORTHO05D003785 1.8e-83 313.2 282 61.7
CANSAT11G1544 Cannabis sativa HOM05D003302 ORTHO05D003785 3.9e-83 312.0 277 60.6
ClCG09G012410 Citrullus lanatus HOM05D003302 ORTHO05D003785 5.1e-83 311.6 283 61.1
HanXRQChr16g0522971 Helianthus annuus HOM05D003302 ORTHO05D003785 5.1e-83 311.6 273 61.2
TWI60G1391 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 8.7e-83 310.8 283 60.8
CiPaw.12G059400 Carya illinoinensis HOM05D003302 ORTHO05D003785 1.1e-82 310.5 279 59.9
Lsat_1_v5_gn_4_38500 Lactuca sativa HOM05D003302 ORTHO05D003785 1.9e-82 309.7 272 61.0
COL.COLO4_17129 Corchorus olitorius HOM05D003302 ORTHO05D003785 2.5e-82 309.3 277 59.9
HanXRQChr07g0188531 Helianthus annuus HOM05D003302 ORTHO05D003785 4.3e-82 308.5 273 60.4
FAN04G1622 Fragaria x ananassa HOM05D003302 ORTHO05D003785 7.4e-82 307.8 276 59.1
MELO3C003368.2 Cucumis melo HOM05D003302 ORTHO05D003785 1.3e-81 307.0 276 59.8
CAN.G572.44 Capsicum annuum HOM05D003302 ORTHO05D003785 2.2e-81 306.2 286 59.1
RcHm_v2.0_Chr7g0208021 Rosa chinensis HOM05D003302 ORTHO05D003785 2.8e-81 305.8 276 59.4
AL8G11350 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 3.7e-81 305.4 277 59.2
FAN18G0007 Fragaria x ananassa HOM05D003302 ORTHO05D003785 6.3e-81 304.7 276 59.1
AT5G46920 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 8.2e-81 304.3 277 59.2
FAN08G3359 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.1e-80 303.9 276 58.7
PSO782G0278 Papaver somniferum HOM05D003302 ORTHO05D003785 1.4e-80 303.5 281 59.8
GSVIVG01023127001 Vitis vinifera HOM05D003302 ORTHO05D003785 1.4e-80 303.5 276 61.6
Lj8P288T36 Lonicera japonica HOM05D003302 ORTHO05D003785 1.8e-80 303.1 265 63.8
Thecc.03G235300 Theobroma cacao HOM05D003302 ORTHO05D003785 1.8e-80 303.1 283 59.0
MD06G1041700 Malus domestica HOM05D003302 ORTHO05D003785 2.4e-80 302.8 276 59.1
Sc25g0000590 Simmondsia chinensis HOM05D003302 ORTHO05D003785 2.4e-80 302.8 277 59.9
FvH4_5g21000 Fragaria vesca HOM05D003302 ORTHO05D003785 3.1e-80 302.4 276 58.3
Aa31LG9G6000 Aethionema arabicum HOM05D003302 ORTHO05D003785 1.2e-79 300.4 277 58.5
Cfa012369 Carpinus fangiana HOM05D003302 ORTHO05D003785 2.0e-79 299.7 284 57.7
Haze_08314 Corylus avellana HOM05D003302 ORTHO05D003785 2.6e-79 299.3 284 58.5
Haze_08315 Corylus avellana HOM05D003302 ORTHO05D003785 2.6e-79 299.3 284 58.5
Duzib084G0162 Durio zibethinus HOM05D003302 ORTHO05D003785 2.6e-79 299.3 283 58.3
Duzib205G0194 Durio zibethinus HOM05D003302 ORTHO05D003785 2.6e-79 299.3 283 58.3
Oeu037876.2 Olea europaea HOM05D003302 ORTHO05D003785 3.4e-79 298.9 275 59.6
THA.LOC104798339 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 3.4e-79 298.9 277 58.5
PSO063G6934 Papaver somniferum HOM05D003302 ORTHO05D003785 7.7e-79 297.7 281 59.1
Solyc08g077385.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 1.0e-78 297.4 285 57.5
Cpa.g.sc29.6 Carica papaya HOM05D003302 ORTHO05D003785 1.7e-78 296.6 285 56.8
Manes.15G171966 Manihot esculenta HOM05D003302 ORTHO05D003785 1.7e-78 296.6 276 58.3
Sp2g11710 Schrenkiella parvula HOM05D003302 ORTHO05D003785 2.2e-78 296.2 274 58.8
MSTRG.1965 Avicennia marina HOM05D003302 ORTHO05D003785 2.9e-78 295.8 282 58.9
FAN13G0755 Fragaria x ananassa HOM05D003302 ORTHO05D003785 8.5e-78 294.3 276 56.5
Sopen08g025970 Solanum pennellii HOM05D003302 ORTHO05D003785 8.5e-78 294.3 285 57.2
C07p30510 Brassica napus HOM05D003302 ORTHO05D003785 1.4e-77 293.5 285 56.5
CDE12G0679 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 2.5e-77 292.7 272 58.1
BolC7t43592H Brassica oleracea HOM05D003302 ORTHO05D003785 3.2e-77 292.4 285 56.1
CDE06G1020 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 7.2e-77 291.2 272 58.1
Nn1g00641 Nelumbo nucifera HOM05D003302 ORTHO05D003785 7.2e-77 291.2 277 58.8
Prupe.5G048500 Prunus persica HOM05D003302 ORTHO05D003785 9.4e-77 290.8 276 57.6
A06p45460 Brassica napus HOM05D003302 ORTHO05D003785 1.2e-76 290.4 284 55.6
PGR142G3064 Punica granatum HOM05D003302 ORTHO05D003785 2.7e-76 289.3 283 55.5
CsaV3_3G049580 Cucumis sativus L. HOM05D003302 ORTHO05D003785 1.4e-75 287.0 283 56.5
Psat1g168040 Pisum sativum HOM05D003302 ORTHO05D003785 1.8e-75 286.6 281 54.8
Aqoxy3G02548 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 6.7e-75 284.6 278 57.6
BraA06t27414Z Brassica rapa HOM05D003302 ORTHO05D003785 8.8e-75 284.3 284 54.9
CAN.G572.51 Capsicum annuum HOM05D003302 ORTHO05D003785 2.5e-74 282.7 261 60.5
AUR62029877 Chenopodium quinoa HOM05D003302 ORTHO05D003785 4.8e-73 278.5 276 55.1
AUR62025829 Chenopodium quinoa HOM05D003302 ORTHO05D003785 2.4e-72 276.2 276 54.3
EL10Ac5g11380 Beta vulgaris HOM05D003302 ORTHO05D003785 5.9e-71 271.6 277 54.5
Lalb_Chr18g0057931 Lupinus albus HOM05D003302 ORTHO05D003785 5.0e-70 268.5 273 53.8
Nitab4.5_0004832g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 2.7e-68 262.7 254 57.9
Nitab4.5_0008694g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 1.0e-67 260.8 254 57.5
Gohir.D03G169466 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.4e-67 260.4 262 57.3
arahy.Tifrunner.gnm1.ann1.HY98G0 Arachis hypogaea HOM05D003302 ORTHO05D003785 8.8e-67 257.7 271 52.8
arahy.Tifrunner.gnm1.ann1.K481AV Arachis hypogaea HOM05D003302 ORTHO05D003785 8.8e-67 257.7 271 52.8
SHI07509 Sapria himalayana HOM05D003302 ORTHO05D003785 8.8e-67 257.7 271 53.9
Rhsim11G0009600 Rhododendron simsii HOM05D003302 ORTHO05D003785 1.1e-66 257.3 213 66.7
PGSC0003DMG400001864 Solanum tuberosum HOM05D003302 ORTHO05D003785 1.1e-66 257.3 254 57.1
TAR375G0955 Trochodendron aralioides HOM05D003302 ORTHO05D003785 7.4e-66 254.6 233 60.1
TPR.G26325 Trifolium pratense HOM05D003302 ORTHO05D003785 4.1e-64 248.8 253 54.2
unitig_62.g23447 Utricularia gibba HOM05D003302 ORTHO05D003785 7.0e-64 248.1 254 55.9
Glyma.09G023300 Glycine max HOM05D003302 ORTHO05D003785 1.3e-62 243.8 278 49.3
Glyma.15G129400 Glycine max HOM05D003302 ORTHO05D003785 1.3e-62 243.8 284 49.3
Phvul.006G128900 Phaseolus vulgaris HOM05D003302 ORTHO05D003785 1.5e-61 240.4 277 48.4
Ca_00809_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 2.5e-61 239.6 253 52.2
VMungo0540G1460 Vigna mungo HOM05D003302 ORTHO05D003785 7.2e-61 238.0 277 48.0
SEGI_25417 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 2.9e-54 216.1 273 45.4
ECA248G2391 Erigeron canadensis HOM05D003302 ORTHO05D003785 8.8e-51 204.5 182 62.1
SEGI_34960 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 8.3e-49 198.0 281 41.6
Actinidia25937 Actinidia chinensis HOM05D003302 ORTHO05D003785 2.7e-47 193.0 183 61.2
ATR0827G173 Amborella trichopoda HOM05D003302 ORTHO05D003785 4.2e-45 185.7 233 47.6
Aqoxy1G01714 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 2.0e-42 176.8 275 39.6
Zm00001eb004560 Zea mays HOM05D003302 ORTHO05D003785 3.4e-42 176.0 281 38.8
Zm00001eb210180 Zea mays HOM05D003302 ORTHO05D003785 1.7e-41 173.7 280 38.2
Os10g0567500 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 1.8e-40 170.2 282 37.2
Psat1g190600 Pisum sativum HOM05D003302 ORTHO05D003785 2.0e-39 166.8 283 36.4
Aa31LG6G5650 Aethionema arabicum HOM05D003302 ORTHO05D003785 7.7e-39 164.9 297 34.7
TAR629G3501 Trochodendron aralioides HOM05D003302 ORTHO05D003785 1.0e-38 164.5 273 35.9
CANSAT35G0225 Cannabis sativa HOM05D003302 ORTHO05D003785 1.3e-38 164.1 289 34.9
Lalb_Chr15g0086841 Lupinus albus HOM05D003302 ORTHO05D003785 3.8e-38 162.5 273 36.3
Nn3g20766 Nelumbo nucifera HOM05D003302 ORTHO05D003785 5.0e-38 162.2 273 35.9
ATR0064G047 Amborella trichopoda HOM05D003302 ORTHO05D003785 6.6e-38 161.8 299 32.8
AL1G43900 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 1.9e-37 160.2 288 35.4
Oeu034153.1 Olea europaea HOM05D003302 ORTHO05D003785 3.3e-37 159.5 273 35.2
CAN.G289.41 Capsicum annuum HOM05D003302 ORTHO05D003785 5.6e-37 158.7 107 73.8
Ca_00544_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 5.6e-37 158.7 272 35.7
CARHR029380 Cardamine hirsuta HOM05D003302 ORTHO05D003785 9.5e-37 157.9 306 33.7
AT1G30010 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 1.2e-36 157.5 295 34.2
ClCG03G006880 Citrullus lanatus HOM05D003302 ORTHO05D003785 1.6e-36 157.1 296 34.1
MELO3C002733.2 Cucumis melo HOM05D003302 ORTHO05D003785 4.7e-36 155.6 276 35.1
Glyma.15G094350 Glycine max HOM05D003302 ORTHO05D003785 4.7e-36 155.6 296 34.1
Sp1g25890 Schrenkiella parvula HOM05D003302 ORTHO05D003785 4.7e-36 155.6 305 33.8
unitig_32.g11443 Utricularia gibba HOM05D003302 ORTHO05D003785 6.1e-36 155.2 282 34.0
Solyc01g112025.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 8.0e-36 154.8 278 36.7
arahy.Tifrunner.gnm1.ann1.JNH5N4 Arachis hypogaea HOM05D003302 ORTHO05D003785 1.0e-35 154.5 282 34.8
PSO675G7265 Papaver somniferum HOM05D003302 ORTHO05D003785 1.0e-35 154.5 289 33.9
arahy.Tifrunner.gnm1.ann1.VBQQ6F Arachis hypogaea HOM05D003302 ORTHO05D003785 1.4e-35 154.1 282 34.8
Potri.004G132450 Populus trichocarpa HOM05D003302 ORTHO05D003785 1.4e-35 154.1 273 34.4
CiPaw.09G124000 Carya illinoinensis HOM05D003302 ORTHO05D003785 3.0e-35 152.9 276 35.9
CsaV3_1G032460 Cucumis sativus L. HOM05D003302 ORTHO05D003785 4.0e-35 152.5 276 34.1
PSO541G5669 Papaver somniferum HOM05D003302 ORTHO05D003785 4.0e-35 152.5 289 33.9
CAN.G1235.21 Capsicum annuum HOM05D003302 ORTHO05D003785 6.8e-35 151.8 274 33.9
Lj1P1187T27 Lonicera japonica HOM05D003302 ORTHO05D003785 6.8e-35 151.8 280 35.0
SGA_v2.0_scaffold1G00170 Striga asiatica HOM05D003302 ORTHO05D003785 6.8e-35 151.8 288 34.4
Cfa000950 Carpinus fangiana HOM05D003302 ORTHO05D003785 1.2e-34 151.0 276 34.8
Haze_05590 Corylus avellana HOM05D003302 ORTHO05D003785 1.2e-34 151.0 276 34.8
THA.LOC104820647 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 1.2e-34 151.0 303 33.0
FvH4_3g05620 Fragaria vesca HOM05D003302 ORTHO05D003785 1.5e-34 150.6 280 34.3
FAN11G3285 Fragaria x ananassa HOM05D003302 ORTHO05D003785 2.0e-34 150.2 281 34.2
Hma1.2p1_0053F.1_g030960 Hydrangea macrophylla HOM05D003302 ORTHO05D003785 2.0e-34 150.2 290 33.8
Sopen01g054090 Solanum pennellii HOM05D003302 ORTHO05D003785 2.6e-34 149.8 278 35.3
Nn6g33800 Nelumbo nucifera HOM05D003302 ORTHO05D003785 3.4e-34 149.4 107 72.9
MD05G1284200 Malus domestica HOM05D003302 ORTHO05D003785 4.4e-34 149.1 277 33.9
Sc05g0006220 Simmondsia chinensis HOM05D003302 ORTHO05D003785 5.7e-34 148.7 279 35.5
MBI07_g26352_MAGBIO Magnolia biondii HOM05D003302 ORTHO05D003785 7.5e-34 148.3 279 32.3
FAN21G1953 Fragaria x ananassa HOM05D003302 ORTHO05D003785 9.8e-34 147.9 276 33.7
A09p36490 Brassica napus HOM05D003302 ORTHO05D003785 1.7e-33 147.1 297 32.7
Dinv30741 Davidia involucrata HOM05D003302 ORTHO05D003785 2.2e-33 146.7 286 32.2
RcHm_v2.0_Chr5g0014061 Rosa chinensis HOM05D003302 ORTHO05D003785 2.2e-33 146.7 282 33.7
Nitab4.5_0000165g0160 Nicotiana tabacum HOM05D003302 ORTHO05D003785 2.9e-33 146.4 273 35.2
PGR083G1399 Punica granatum HOM05D003302 ORTHO05D003785 2.9e-33 146.4 271 35.1
CDE11G0149 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 3.7e-33 146.0 237 33.3
COL.COLO4_29330 Corchorus olitorius HOM05D003302 ORTHO05D003785 4.9e-33 145.6 282 33.3
PGSC0003DMG400018655 Solanum tuberosum HOM05D003302 ORTHO05D003785 4.9e-33 145.6 285 33.3
BraA09t39172Z Brassica rapa HOM05D003302 ORTHO05D003785 6.4e-33 145.2 295 32.2
Nitab4.5_0011942g0010 Nicotiana tabacum HOM05D003302 ORTHO05D003785 8.3e-33 144.8 285 34.4
VMungo0540G2182 Vigna mungo HOM05D003302 ORTHO05D003785 1.8e-32 143.7 275 32.7
DCAR_003918 Daucus carota HOM05D003302 ORTHO05D003785 9.2e-32 141.4 296 33.4
Sabra04G0085500 Salix brachista HOM05D003302 ORTHO05D003785 9.2e-32 141.4 273 34.1
BcaC05g27013 Brassica carinata HOM05D003302 ORTHO05D003785 1.2e-31 141.0 291 32.0
C05p28800 Brassica napus HOM05D003302 ORTHO05D003785 1.2e-31 141.0 291 32.0
BolC5t31597H Brassica oleracea HOM05D003302 ORTHO05D003785 1.2e-31 141.0 291 32.0
Gohir.D11G331550 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.2e-31 141.0 280 31.8
Thecc.05G173100 Theobroma cacao HOM05D003302 ORTHO05D003785 1.6e-31 140.6 290 32.8
QL10p038886 Quercus lobata HOM05D003302 ORTHO05D003785 3.5e-31 139.4 273 34.4
Ah.09g232620 Amaranthus hybridus HOM05D003302 ORTHO05D003785 5.9e-31 138.7 289 31.1
Manes.17G069108 Manihot esculenta HOM05D003302 ORTHO05D003785 1.7e-30 137.1 276 33.3
Duzib128G1415 Durio zibethinus HOM05D003302 ORTHO05D003785 5.0e-30 135.6 292 31.8
Lsat_1_v5_gn_8_116740 Lactuca sativa HOM05D003302 ORTHO05D003785 5.0e-30 135.6 282 32.6
SHI24871 Sapria himalayana HOM05D003302 ORTHO05D003785 8.6e-30 134.8 281 31.7
Atru.chr10.1237 Acer truncatum HOM05D003302 ORTHO05D003785 1.5e-29 134.0 276 31.9
AUR62002753 Chenopodium quinoa HOM05D003302 ORTHO05D003785 1.5e-29 134.0 279 32.3
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 1.9e-29 133.7 287 33.4
Nn6g33799 Nelumbo nucifera HOM05D003302 ORTHO05D003785 1.6e-28 130.6 77 76.6
Zm00001eb006520 Zea mays HOM05D003302 ORTHO05D003785 1.6e-28 130.6 300 30.0
HanXRQChr15g0486511 Helianthus annuus HOM05D003302 ORTHO05D003785 3.6e-28 129.4 274 32.5
Os12g0407300 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 2.3e-27 126.7 283 31.1
HPP92_002850 Vanilla planifolia HOM05D003302 ORTHO05D003785 3.1e-27 126.3 277 31.0
EL10Ac4g07785 Beta vulgaris HOM05D003302 ORTHO05D003785 5.2e-27 125.6 288 31.2
TWI38G0102 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 6.8e-27 125.2 285 30.2
ATR0665G386 Amborella trichopoda HOM05D003302 ORTHO05D003785 7.8e-23 111.7 156 43.6
Rhsim13G0194800 Rhododendron simsii HOM05D003302 ORTHO05D003785 3.9e-22 109.4 268 30.6
vmacro03962 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 8.6e-22 108.2 304 29.9
EL10Ac8g19691 Beta vulgaris HOM05D003302 ORTHO05D003785 1.8e-19 100.5 264 32.2
Cpa.g.sc166.11 Carica papaya HOM05D003302 ORTHO05D003785 4.1e-16 89.4 248 28.6
VMungo0051G0001 Vigna mungo HOM05D003302 ORTHO05D003785 4.1e-16 89.4 66 62.1
Actinidia19525 Actinidia chinensis HOM05D003302 ORTHO05D003785 3.5e-15 86.3 277 26.4
AUR62030203 Chenopodium quinoa HOM05D003302 ORTHO05D003785 1.3e-14 84.3 206 28.2
Gohir.A11G314450 Gossypium hirsutum HOM05D003302 ORTHO05D003785 2.1e-12 77.0 128 33.6
TAR383G0945 Trochodendron aralioides HOM05D003302 ORTHO05D003785 8.9e-11 71.6 65 66.2
ATR1091G061 Amborella trichopoda HOM05D003302 ORTHO05D003785 8.4e-09 65.1 96 37.5
MD10G1262600 Malus domestica HOM05D003302 ORTHO05D003785 9.2e-08 61.6 99 38.4
arahy.Tifrunner.gnm1.ann1.G4BUBZ Arachis hypogaea HOM05D003302 ORTHO05D003785 1.6e-07 60.8 41 61.0


User provided reference genes

Program Settings